canopy2

Metagenomics Canopy Clustering Implementation.

Faster and more memory efficient implementation of the canopy clustering algorithm (doi:10.1038/nbt.2939).

Quickstart

git clone https://github.com/hildebra/canopy2.git
cd canopy2
make
./cc.bin -v

License

GPL-2.0: Please see License.txt

Author

This reimplementation is based on the original code by Piotr Dworzynski, and has since been improved (memory efficiency, speed, additional functionality) and maintained by Falk Hildebrand.

Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
.github/workflows		.github/workflows
test		test
.gitignore		.gitignore
Canopy.cpp		Canopy.cpp
Canopy.hpp		Canopy.hpp
CanopyClustering.cpp		CanopyClustering.cpp
CanopyClustering.hpp		CanopyClustering.hpp
LICENSE		LICENSE
Log.cpp		Log.cpp
Log.hpp		Log.hpp
Makefile		Makefile
Point.cpp		Point.cpp
Point.hpp		Point.hpp
README.md		README.md
Stats.cpp		Stats.cpp
Stats.hpp		Stats.hpp
TimeProfile.cpp		TimeProfile.cpp
TimeProfile.hpp		TimeProfile.hpp
gzstream.h		gzstream.h
main.cpp		main.cpp
options.cpp		options.cpp
options.h		options.h
precision_type.hpp		precision_type.hpp
prog_bar_misc.hpp		prog_bar_misc.hpp
program_options_misc.hpp		program_options_misc.hpp
robin_hood.h		robin_hood.h
signal_handlers.cpp		signal_handlers.cpp
signal_handlers.hpp		signal_handlers.hpp
test.sh		test.sh

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hildebra/canopy2

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