Skip to content

Issues: higlass/clodius

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

34 Open 22 Closed
34 Open 22 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Pandas FutureWarning: Series.__getitem__ deprecation warning
#152 opened Apr 18, 2024 by manzt
2
Unable to convert bed to States Data (multivec) file using clodius bedfile-to-multivec
#144 opened May 11, 2022 by haotingjia0
11
Ability to support file-like objects in clodius.tiles
#142 opened Feb 7, 2022 by manzt
1
error installation
#136 opened Dec 15, 2020 by Nico-FR
5
aggregate bedgraph keeps being killed
#127 opened May 12, 2020 by astrovsky01
5
Set up error
#126 opened May 8, 2020 by anilkanthi
2
mean +/- error question
#123 opened Feb 5, 2020 by zhanyinx
1
how to prepare the a special bed fild for Higlass
#115 opened Nov 17, 2019 by JiangXu123
1
Add test for npvector
#102 opened Jul 5, 2019 by flekschas
@flekschas
Clodius aggregate with new assembly
#87 opened May 24, 2019 by gibcus
3
turn on test_bedarcsdb_tiles1? question
#84 opened May 21, 2019 by mccalluc
bigwig_test.py fails with "numpy.ufunc size changed" bug
#79 opened May 21, 2019 by mccalluc
1
tiff -> mrmatrix? question
#72 opened Apr 22, 2019 by mccalluc
@pkerpedjiev
Support bounds for mrmatrix feature
#67 opened Apr 19, 2019 by mccalluc
Keep clodius docs under clodius feature
#66 opened Apr 19, 2019 by mccalluc
Add tsv_to_mrmatrix to exports feature
#65 opened Apr 19, 2019 by mccalluc
mrmatrix: coarsen should create nan_values at each resolution? enhancement
#62 opened Apr 19, 2019 by mccalluc
1
Validate mrmatrix on load enhancement
#61 opened Apr 19, 2019 by mccalluc
docker run example in README does not work for me
#51 opened Apr 12, 2019 by mccalluc
different behavior for bed or bed.gz on bed_to_multivec
#47 opened Jan 30, 2019 by burakalver
aggregate bedpe not working when output file is not specified
#40 opened Nov 27, 2018 by flekschas
Introduce dataframe file type to replace / supplement beddb and bed2ddb feature
#37 opened Nov 11, 2018 by pkerpedjiev
2
h5py KeyError exception with clodius 0.9.4
#35 opened Nov 2, 2018 by alexpreynolds
error installation
#32 opened Sep 13, 2018 by egenomics
5
clodius aggregate: NameError: global name '_bigwig' is not defined
#28 opened May 13, 2018 by dvera
9
ProTip! Mix and match filters to narrow down what you’re looking for.