Requirements

Make sure you have a relatively recent version of node (v4.1.1 is known to work).

To build, do

npm run build

And for production (minifed, deduped)

npm run build-production

See package.json for more build options and scripts.

Example

makeSyntenyDotplots({
  data_url: "data/11691.22557.ks", // path to a .ks file

  element_id: "#myDiv",            // id of the div you want the 
                                   // plots to be put in

  genome_x: {

    name: "Pan Troglodytes",       // English name of the genome 
                                   // (for plot axes)

    id: "11691",                   // ID number (usually some digits)

    chromosomes: [
      {
        gene_count: 2319,          // ignored for now

        length: 115123233,         // length of the chromosome 
                                   // in neucleotide space

        name: "1"
      }
    ]
  },

  genome_y: {
    ...                            // same as above
  }

  gen_coge_seq_link: function(aId, bId) {
    // Create a URL for a CoGe sequence comparison. This will override the
    // default link generation scheme, which defaults to
    // 'http://genomevolution.org/coge/GEvo.pl?fid1=42;fid2=24;apply_all=50000;num_seqs=2'
    return 'https://www.google.com#q=' + aId + '+' + bId;
  }
});