Predixcan-workflow

Nextflow workflow for Predixcan

Set up

Install nextflow from offfical Nextflow website or Bioconda.

Bioconda installation steps

• Ensure miconda is set up on your machine

• Create an environment to install nextflow

  conda create -n env_name
  

• Activate the newly created environment

  conda activate env_name
  

• Install nextflow to the environment

  conda install nextflow
  

• Once set up we are ready to run the workflow on our data

Usage

Details on the usage of PredictDb are available here.

Description of file formats used is found here.