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Here you will find several articles that might help you getting up and running, or troubleshoot common issues.

Fixed bug fore --zscore_column parameter, where signs wouldn't be flipped when GWAS and transcriptome model didn't agree on effect allele.
Support for new PredictDB database format. (more info on this soon)
New output parameters: prediction performance pvalue, prediction performance qvalue, MetaXcan association effect size.