Skip to content

Issues: hakyimlab/MetaXcan

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

58 Open 51 Closed
58 Open 51 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

What is the "allele average" in PrediXcan dosage format file?
#190 opened Jan 29, 2024 by ZhijieHanbioinfor
0 % of model's snps used for trans QTL
#189 opened Jan 19, 2024 by elnetwas
Seeking Assistance with PrediXcan Prediction
#188 opened Dec 12, 2023 by Dragonfly1108
snp_map_file format for SPrediXcan?
#186 opened Nov 22, 2023 by mooreann
pred_perf_r2,pred_perf_pval.pred_perf_qval are always NA
#184 opened Oct 15, 2023 by empathy-c
3
GWAS_parsing.py - AttributeError: 'DataFrame' object has no attribute 'sample_size'
#182 opened Sep 20, 2023 by kateelliott
fewer SNP input, fewer genes output. Why？
#181 opened Sep 17, 2023 by DonaldSandoz2000
Is there any way to output the variant_id or rsID for the SNPs used in S-PrediXcan ？
#180 opened Sep 7, 2023 by Stray357
2
output_file
#179 opened Aug 21, 2023 by sulinq
The ethnic groups of genotype reference panel
#178 opened Aug 18, 2023 by wei110110
Error when running SMultiXcan.py
#177 opened Aug 12, 2023 by dym22
2
0 % of model's snps used
#176 opened Aug 11, 2023 by CarlosAmadeo7
8
MASHR-based GTEx v8 gene expression models
#174 opened May 27, 2023 by Nadahuihui
issue while running SMulTiXcan.py. AttributeError: 'Series' object has no attribute 'zscore'
#173 opened May 5, 2023 by charliexbrown
2
Requesting help：about QTL_to_PredictDB: AttributeError: 'NoneType' object has no attribute 'endswith'
#172 opened Apr 3, 2023 by jambo611
heritability estimates of gtex-v8 genes
#171 opened Mar 16, 2023 by gpwhiz
S-MultiXcan: extracting exact z-scores used to compute p-values (for p < e-324)
#170 opened Feb 23, 2023 by DoraCChen
3
Too slow for calculating the expression level Tg
#168 opened Nov 9, 2022 by Younsuk11
Very few SNPs used when using Michigan imputed data
#167 opened Nov 4, 2022 by mchikina
Only running 3 genes when using files I just pulled from PredictDB
#166 opened Nov 3, 2022 by AlexHatoum
Good meta-analysis method after predixcan
#165 opened Sep 27, 2022 by hara555555
1
How does PrediXcan with mashr model deal with missing genotype?
#164 opened Sep 26, 2022 by xiaoyangli2934
Problems with input data
#163 opened Sep 8, 2022 by Alina-Song
3
Problem creating covariance for s-mutlixcan
#162 opened Sep 5, 2022 by fernandogs97
1
Error in installing MetaXcan and creating the environment in the LISA SURFSARA system
#161 opened Sep 1, 2022 by FernandaSantos13
1
ProTip! Adding no:label will show everything without a label.