Synopsis

This is an Maven project implementing an ImageJ plugin for Cell analysis. This project is carried out by two ISIMA students for the laboratory of INRA Clermont-Ferrand.

Download

To use the plugin download this jar file, and copy it intp images plugins/ directory.

Installation

You can even collaborate with developers using a different IDE :

• In Eclipse, for example, it is as simple as File>Import...>Existing Maven Project.

• In NetBeans, it is even simpler: File>Open Project.

• The same works in IntelliJ.

• If jEdit is your preferred IDE, you will need the Maven Plugin.

To copy the artifact into the correct place, you can call mvn -Dimagej.app.directory=/path/to/ImageJ.app/. This will not only copy your artifact, but also all the dependencies. Restart your ImageJ or call Help>Refresh Menus to see your plugin in the menus.

Eclipse: To ensure that Maven copies the plugin to your ImageJ folder

1. Go to Run Configurations...
2. Choose Maven Build
3. Add the following parameter:
   • name: imagej.app.directory
   • value: /path/to/ImageJ.app/

This ensures that the final .jar file will also be copied to your ImageJ plugins folder everytime you run the Maven Build