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Added Graph Encoder Embedding #986

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wants to merge 24 commits into from
Closed

Added Graph Encoder Embedding #986

wants to merge 24 commits into from

Commits on Sep 15, 2022

  1. add shell of GEE model

    @bdpedigo
    bdpedigo committed Sep 15, 2022
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  2. rename, fix __all__

    @bdpedigo
    bdpedigo committed Sep 15, 2022
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  3. add regularized laplacian

    @bdpedigo
    bdpedigo committed Sep 15, 2022
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Commits on Sep 16, 2022

  1. Merge pull request #988 from microsoft/main 

    main into dev pre 2.0.1
    @daxpryce
    daxpryce committed Sep 16, 2022
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  2. Fix seaborn syntax

    @bdpedigo @daxpryce
    bdpedigo authored and daxpryce committed Sep 16, 2022
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  3. Increment bugfix version

    @bdpedigo @daxpryce
    bdpedigo authored and daxpryce committed Sep 16, 2022
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  4. Merge branch 'dev' into gee

    @bdpedigo
    bdpedigo committed Sep 16, 2022
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Commits on Oct 13, 2022

  1. Exclude 3.6.1 

    I added to line 35. I assumed the asterisk on 3.3 meant all versions of 3.3 ex (3.3.1, 3.3.2) are all excluded from the matplotlib. 

Is this correct?
    @hugwuoke @daxpryce
    hugwuoke authored and daxpryce committed Oct 13, 2022
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  2. Update setup.cfg

    @hugwuoke @daxpryce
    hugwuoke authored and daxpryce committed Oct 13, 2022
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Commits on Oct 14, 2022

  1. Merge branch 'dev' into gee

    @bdpedigo
    bdpedigo committed Oct 14, 2022
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  2. Update README.md 

    Removed outdated Zenodo DOI from README.md
    @ktwillcode @bdpedigo
    ktwillcode authored and bdpedigo committed Oct 14, 2022
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Commits on Dec 8, 2022

  1. Fixed graph matching with similarity matrix of unequal dimensions (#1002 

    )

* Fix seaborn syntax

* fixed padding of a similarity amtrix for graph matching

* fixing mypy complaint from _adj_pad

* use naive padding for similarity

* add a test

* Revert "Fix seaborn syntax"

This reverts commit fd38e05.

* try to fix ipython error in doc generation

* just make sure the original S had the right shape

* run black

* fix tests

Co-authored-by: Benjamin Pedigo <benjamindpedigo@gmail.com>
    @dokato @bdpedigo
    dokato and bdpedigo committed Dec 8, 2022
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Commits on Dec 9, 2022

  1. Edited contributing guidelines (#1000) 

    * Editing contributing guidelines 

My edits were based on my experience with getting set up on GitHub. I added some minor changes of things I wish I had read while I was trying to set up my account.

* fix typo

Co-authored-by: Benjamin Pedigo <benjamindpedigo@gmail.com>
    @hugwuoke @bdpedigo
    hugwuoke and bdpedigo committed Dec 9, 2022
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  2. Update setup.cfg (#999)

    @bdpedigo
    bdpedigo committed Dec 9, 2022
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  3. Added release notes for 2.0.1 (#1003)

    @bdpedigo
    bdpedigo committed Dec 9, 2022
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Commits on Jan 4, 2023

  1. add 3.10, remove 3.7 from metadata

    @bdpedigo @daxpryce
    bdpedigo authored and daxpryce committed Jan 4, 2023
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  2. make tests go vroom

    @bdpedigo @daxpryce
    bdpedigo authored and daxpryce committed Jan 4, 2023
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  3. run black

    @bdpedigo @daxpryce
    bdpedigo authored and daxpryce committed Jan 4, 2023
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  4. run isort

    @bdpedigo @daxpryce
    bdpedigo authored and daxpryce committed Jan 4, 2023
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  5. ban gensim 4.2.0

    @bdpedigo @daxpryce
    bdpedigo authored and daxpryce committed Jan 4, 2023
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  6. bump major version

    @bdpedigo @daxpryce
    bdpedigo authored and daxpryce committed Jan 4, 2023
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  7. fix toc

    @bdpedigo @daxpryce
    bdpedigo authored and daxpryce committed Jan 4, 2023
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Commits on Jan 9, 2023

  1. Hard capped networkx version to avoid incompatability (#1016) 

    * hard capped networkx version to avoid incompatability

* set networkx to <= 3.0

* Update setup.cfg

Co-authored-by: alyakin314 <antonalyakin@Antons-MacBook-Pro-4.local>
Co-authored-by: Benjamin Pedigo <benjamindpedigo@gmail.com>
    @alyakin314 @bdpedigo
    3 people committed Jan 9, 2023
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Commits on Feb 16, 2023

  1. Merge branch 'dev' into gee

    @bdpedigo
    bdpedigo committed Feb 16, 2023
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