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3.1.0 release #1034

Merged
merged 3 commits into from
May 22, 2023
Merged

3.1.0 release #1034

merged 3 commits into from
May 22, 2023

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bdpedigo
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bdpedigo and others added 3 commits March 27, 2023 13:39
…rices) (#1018)

* Update setup.cfg

* add conditional types logic for pipeline

* fix a reference to sparse matrix

* remove all reference to csr_matrix

* fix array

* remove nx.testing

* fix graphs equal

* fix some weird reversions to csr_matrix

* remove OrderedGraph support

* fix tutorial reference to csr_array

---------

Co-authored-by: hugwuoke <85888975+hugwuoke@users.noreply.github.com>
* Created new branch with files from jw-feature branch

* Fix seaborn syntax

* Increment bugfix version

* Cleared many mypy errors

* Corrected some typing and improved test

* More fixes and edits

* Fixing docs issues

* Exclude 3.6.1

I added to line 35. I assumed the asterisk on 3.3 meant all versions of 3.3 ex (3.3.1, 3.3.2) are all excluded from the matplotlib. 

Is this correct?

* Update setup.cfg

* types need to be AdjacencyMatrix

* bump scipy, which means deprecate python 3.7

* maybe fix labels error

* add beartype

* clean up docs and add a note

* clean up line lengths and indentation in docstring

* black

* fix line lengths

* add intersphinx

* add another intersphinx

* fix doc indentation

* more docstring work

* clarify number of nodes

* add math for null and alt

* remove unused imports

* typo

* add some math and notes and ref

* add ref

* disclaimers

* add some warnings

* try to fix changes from auto toc

* fix isort

* fix typing issues

* Update README.md

Removed outdated Zenodo DOI from README.md

* Deleted bad kwargs from tests

* some typing/tests

* fix to non-unity probability ratio

* fix code format

* fix tests

* fix citation

* fix more citation

* remove file

* fix docs

* clean up tests

* docs

* fix up tutorials

* fix notebook

* fix int issue

* run black

* black with updated

* fix notebook math

* fix imports

* clean up tutorial

---------

Co-authored-by: Jeremy Welland <jwellan1@jhmi.edu>
Co-authored-by: Dax Pryce <daxpryce@microsoft.com>
Co-authored-by: hugwuoke <85888975+hugwuoke@users.noreply.github.com>
Co-authored-by: Kartikeya Tripathi <96724863+ktwillcode@users.noreply.github.com>
* add release notes

* bump version
@bdpedigo bdpedigo merged commit dc00f2c into main May 22, 2023
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