Revert "Added density test and group connection test to inference mod…

…ule" (#1031)
graspologic-org · May 12, 2023 · 3fbc049 · 3fbc049
1 parent 3e88028
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Showing 17 changed files with 8 additions and 1,917 deletions.
diff --git a/README.md b/README.md
@@ -7,7 +7,7 @@
 [![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/licenses/MIT)
 
 ## `graspologic` is a package for graph statistical algorithms.
-<!-- no toc -->
+
 - [Overview](#overview)
 - [Documentation](#documentation)
 - [System Requirements](#system-requirements)

diff --git a/docs/conf.py b/docs/conf.py
@@ -86,7 +86,6 @@
     "scipy": ("https://docs.scipy.org/doc/scipy", None),
     "seaborn": ("https://seaborn.pydata.org", None),
     "sklearn": ("https://scikit-learn.org/dev", None),
-    "statsmodels": ("https://www.statsmodels.org/stable", None),
 }
 
 intersphinx_disabled_reftypes = []

diff --git a/docs/reference/reference/inference.rst b/docs/reference/reference/inference.rst
@@ -6,10 +6,6 @@ Inference
 Two-graph hypothesis testing
 ----------------------------
 
-.. autofunction:: density_test
-
-.. autofunction:: group_connection_test
-
 .. autofunction:: latent_position_test
 
 .. autofunction:: latent_distribution_test
diff --git a/docs/sphinx-ext/toctree_filter.py b/docs/sphinx-ext/toctree_filter.py
@@ -1,15 +1,13 @@
 # Copied and modified from https://stackoverflow.com/questions/15001888/conditional-toctree-in-sphinx
 
 import re
-
 from sphinx.directives.other import TocTree
 
 
 def setup(app):
-    app.add_config_value("toc_filter_exclude", [], "html")
-    app.add_directive("toctree-filt", TocTreeFilt)
-    return {"version": "1.0.0"}
-
+    app.add_config_value('toc_filter_exclude', [], 'html')
+    app.add_directive('toctree-filt', TocTreeFilt)
+    return {'version': '1.0.0'}
 
 class TocTreeFilt(TocTree):
     """
@@ -23,8 +21,7 @@ class TocTreeFilt(TocTree):
     form `:secret:ultra-api` or `:draft:new-features` will be excuded from
     the final table of contents. Entries without a prefix are always included.
     """
-
-    hasPat = re.compile("\s*(.*)$")
+    hasPat = re.compile('\s*(.*)$')
 
     # Remove any entries in the content that we dont want and strip
     # out any filter prefixes that we want but obviously don't want the

diff --git a/docs/tutorials/index.rst b/docs/tutorials/index.rst
@@ -80,8 +80,6 @@ are tutorials for robust statistical hypothesis testing on multiple graphs.
    :maxdepth: 1
    :titlesonly:
 
-   inference/density_test
-   inference/group_connection_test
    inference/latent_position_test
    inference/latent_distribution_test
 

diff --git a/docs/tutorials/inference/density_test.ipynb b/docs/tutorials/inference/density_test.ipynb