cookiecutter-popper-r

Cookiecutter template for research projects in R on the Popper workflow execution engine.

The goal is to provide a structure for developing reproducible projects in computational research (machine learning, statistics, bioinformatics, ...) following best practices in a container-native environment.

Resource:

• A guide for developing R workflows for computational research with Popper is available in the Popper documentation.
• An example project following this structure is available at popper-examples.

Requirements

• Python >= 3.5
• Cookiecutter >= 1.1

Additionally, to run the generated project:

• Popper
• Docker

Generating a project template

Run

cookiecutter gh:getpopper/cookiecutter-popper-r