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18 Open 70 Closed
18 Open 70 Closed
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Issues list

Add profile for Pseudomonas aeruginosa
#306 opened May 21, 2024 by samuell
Add profile for Acinetobacter baumannii
#305 opened May 21, 2024 by samuell
@samuell
Add profile for Streptococcus pyogenes
#304 opened May 21, 2024 by samuell
Add profile for Enterococcus faecium
#303 opened May 21, 2024 by samuell
Add profile for Enterococcus faecalis
#302 opened May 21, 2024 by samuell
Check compatibility with Nanopore
#301 opened May 17, 2024 by Emkago
Add QC for Nanopore data
#299 opened May 17, 2024 by Emkago
Add Nanopore test data must
#297 opened May 14, 2024 by Emkago
@Emkago
Add species Neisseria gonorrhoeae could
#291 opened Apr 25, 2024 by fwa93
4
Prodigal training files are moved in Makefile but not in config files bug Something isn't working
#279 opened Mar 26, 2024 by samuell
1
INH resistance should be scored as low or high
#230 opened Nov 30, 2023 by LordRust
Include sourmash signatures in results JSON file could
#202 opened Oct 24, 2023 by mhkc Visualisation
Intraspecies contamination check should
#183 opened Sep 21, 2023 by LordRust Pipeline efficiency
@ryanjameskennedy
1
Add sanity checks in order to prevent pipeline termination errors good first issue Good issue to tackle for new contributors should
#161 opened Jul 11, 2023 by LordRust Pipeline efficiency
add subsampling of reads before de novo assembly good first issue Good issue to tackle for new contributors should
#160 opened Jun 30, 2023 by LordRust Pipeline efficiency
1
Automatic submission function for new MLST types could
#81 opened Mar 9, 2023 by LordRust Automation & testing
Enforce limitation on characters in sample ids? good first issue Good issue to tackle for new contributors
#60 opened Jun 15, 2022 by mhkc Pipeline efficiency
1
JASEN crashes when there are multiple files with identical sample-id in input csv good first issue Good issue to tackle for new contributors must WIP Work in progress
#59 opened Jun 15, 2022 by mhkc Pipeline efficiency
@ryanjameskennedy
1
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