v1.0.1 Release

This release fixes:

Correct version is now reported with --version (only works with cloned source:
git clone -b v1.0.1 --single-branch git@github.com:genome/bam-readcount)
Usage message now includes cram_file as well as bam_file

The reviewers of the bam-readcount paper (in submission) had many thoughtful
suggestions for improving README.md and their comments also led to a new hands-on
tutorial for this release. Thank you!

v1.0.0 Release

This release features:

• Switch to samtools-1.10, adding speed and CRAM support
• Docker image
• Documentation updates

Many people contributed ideas and testing. Thank you!

v0.8.0 Release

This release features:

• A major bug fix where indels may not be counted correctly.
• Some changes to simplify the build process and make it more correct.(Thanks @tabbott)
• Documentation updates. (Thanks @morgantaschuk)
• A bug fix to prevent a segmentation fault when the input file is missing. (Thanks to @sambrightman)
• A reduction in the default number of warnings. It no longer spills out millions of warnings by default with modern BAM files.
• An MIT license.

v0.7.4 Release

This release fixes some minor issues with executable naming when making a package. The executable is now correctly deployed as bam-readcount0.7 (as opposed to bam-readcount0.7.x)

v0.7.3 Release

This release incorrectly fixes some minor issues with executable naming when making a package. Please use v0.7.4 instead.

v0.7.2 Release

This is a bug-fix release addressing an edge-case that can result in no deletion counts being reported after a certain chromosome.

v0.7.0 release

v0.7.0 release