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43 Open 40 Closed
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Issues list

Confirm minimac command for apps@1000g-phase3-low@1.0.0 (hg38)
#141 opened May 8, 2024 by andrew-slater
Post-imputation frequency plot
#140 opened Apr 30, 2024 by rskl92
Question: difference between dose.vcf.gz and empiricalDose.vcf.gz?
#139 opened Apr 22, 2024 by swvanderlaan
Allelle swap QC misses some counters
#137 opened Mar 27, 2024 by abought
ChrX nonPAR region includes ambiguous samples
#136 opened Mar 15, 2024 by swvanderlaan
Higher zip file corruption rates with aes256 option enabled
#135 opened Mar 4, 2024 by abought
1
How are multiallelic sites handled?
#133 opened Feb 6, 2024 by alkaZeltser
Imputation failed due to strand flip errors
#131 opened Jan 16, 2024 by ebrigos
1
Incorrect job log path
#129 opened Dec 6, 2023 by mamanambiya
3
Imputation on chromosome 6 failed. Imputation was stopped!!!
#127 opened Dec 5, 2023 by asangphukieo
Chromosome X imputation problem!
#125 opened Nov 29, 2023 by boseb
Original Variant Identifiers Are Destroyed
#120 opened Oct 4, 2023 by DarioS
No Variant is TYPED_ONLY
#119 opened Oct 4, 2023 by DarioS
rsq Filter Choices Justification
#118 opened Oct 3, 2023 by DarioS
A lot of variants site have no variations
#113 opened Aug 23, 2023 by Yuling192
show fail logs
#112 opened Aug 16, 2023 by mfazel
the uncorrect recognition of prefix when using hg38 build
#111 opened Aug 2, 2023 by FrancisNietzsche
construct HLA imputation server
#110 opened Jul 31, 2023 by ksmpooh
How to disable low call rate exclusion?
#109 opened Jul 1, 2023 by scpv
Calculating QC Statistics failed.
#103 opened Mar 10, 2023 by alkaZeltser
1
Imputation vs TOPMED data using API?
#95 opened Jan 10, 2023 by federicosq85
Imputation failing with multiple chromosomes
#94 opened Dec 28, 2022 by mehshad
Specify job name in API command
#88 opened Aug 22, 2022 by teng-gao
AWS/S3 limited to us-east-1 TOPMed
#84 opened May 1, 2022 by quattro
Imputation quality score (rsq_hat) TOPMed
#76 opened Feb 16, 2022 by glettre
ProTip! Adding no:label will show everything without a label.