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@gao-lab

Gao Lab

Bioinformatics and Computational Genomics

Popular repositories

  1. GLUE GLUE Public

    Graph-linked unified embedding for single-cell multi-omics data integration

    Python 338 46

  2. Guideline-for-Computational-Biology-and-Bioinformatics Guideline-for-Computational-Biology-and-Bioinformatics Public

    285 90

  3. Cell_BLAST Cell_BLAST Public

    A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

    Python 82 12

  4. SLAT SLAT Public

    Spatial-Linked Alignment Tool

    Python 61 7

  5. CPC2_standalone CPC2_standalone Public

    Official repo for the standalone package of Coding Potential Calculator (CPC) 2.

    Python 19 12

  6. ePooling ePooling Public

    Expectation pooling: An effective and interpretable method of pooling for predicting DNA-protein binding

    Python 16 3

Repositories

Showing 10 of 26 repositories
  • SEERS Public
    Jupyter Notebook 1 0 0 0 Updated May 2, 2024
  • SVEN Public

    Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model

    Python 1 0 0 0 Updated Apr 14, 2024
  • GLUE Public

    Graph-linked unified embedding for single-cell multi-omics data integration

    Python 338 MIT 46 11 2 Updated Feb 23, 2024
  • SLAT Public

    Spatial-Linked Alignment Tool

    Python 61 MIT 7 3 1 Updated Dec 20, 2023
  • SLE-ImmuneAtlas Public

    scRNA and scVDJ analysis for SLE samples

    Jupyter Notebook 2 1 0 0 Updated Sep 24, 2023
  • ProjectManagementWorkshop Public template

    This is a demo repo for project management in Technology Workshop 2023

    Python 0 MIT 0 0 0 Updated Aug 25, 2023
  • Cell_BLAST Public

    A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

    Python 82 MIT 12 7 0 Updated Jul 24, 2023
  • Python 7 1 0 0 Updated Apr 7, 2023
  • Markonv_figures Public

    Markonv: a novel convolutional layer for identifying inter-positional correlations effectively and efficiently This is the repository for reproducing figures and tables in the paper.

    Python 3 MIT 1 0 0 Updated Dec 11, 2022
  • HERE Public

    Human Embryonic RNA Editome

    R 3 0 0 0 Updated Dec 1, 2022

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