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Issues list

Splan: correct how wrapper parses the ykl parameter
#5989 opened May 3, 2024 by jennaj
Maaslin2: error during version update
#5988 opened May 3, 2024 by renu-pal
2
RNA-Star correction: outWigType
#5987 opened May 3, 2024 by jennaj
DIMet: update tool description and parameters
#5984 opened May 3, 2024 by bdartigues
Bowtie overcommits CPU ressources
#5983 opened May 2, 2024 by bernt-matthias
1
Minimap2 option
#5978 opened Apr 29, 2024 by aabaricalla
1
Volcano plot tool doesn't use plot title when given
#5976 opened Apr 29, 2024 by pcm32
1
Adding a new sub-tool (RepeatModeler: generateSeedAlignments) tool request
#5950 opened Apr 15, 2024 by s-travers
source manifest seems to be mandatory for data_manager_ncbi_fcs_gx_database_downloader
#5925 opened Apr 1, 2024 by microfuge
1
integrate actc tool request
#5790 opened Feb 24, 2024 by bgruening
11
Improve/Fix slices in Table Compute
#5783 opened Feb 20, 2024 by paulzierep
Add ARIBA tool request
#5754 opened Feb 7, 2024 by FJavbMx
Cactus: use a collection for input
#5752 opened Feb 5, 2024 by TomHarrop
Roary: adjust the command line to prevent intermediate file deletion?
#5751 opened Feb 5, 2024 by jennaj
1
Bracken data manager requires labels and help documentation
#5745 opened Feb 2, 2024 by mvdbeek
13
Update request for Kodoja database search (version 0.0.8)
#5744 opened Feb 2, 2024 by jennaj
raxml output missing when classifying environmental sequences
#5734 opened Jan 25, 2024 by rvosa
Infer collection element naming with default_identifier_source
#5729 opened Jan 23, 2024 by neoformit
6
Output RData and RScript logs for Bioconductor tools that fail
#5725 opened Jan 19, 2024 by jennaj
Update emboss tools
#5709 opened Jan 11, 2024 by bernt-matthias
1
Test discovered output branch
#5708 opened Jan 11, 2024 by mvdbeek
5
Improve error parsing augustus_training 3.4.0+galaxy1
#5682 opened Dec 14, 2023 by jennaj
Make Metaphlan/Humann DBs transferable
#5681 opened Dec 14, 2023 by bernt-matthias
Galaxy community manuscript 2024 - author details needed
#5677 opened Dec 13, 2023 by bgruening
Incorrect number of total reads in gx-fastq-paired-end-joiner
#5675 opened Dec 11, 2023 by samhimes92
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