Create version 23.1.3

galaxyproject · Dec 1, 2023 · d7cc988 · d7cc988
1 parent 98dc9c9
commit d7cc988
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diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py
@@ -1,3 +1,3 @@
 VERSION_MAJOR = "23.1"
-VERSION_MINOR = "3.dev0"
+VERSION_MINOR = "3"
 VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "")
diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.1.3.dev0
------------
-
+-------------------
+23.1.3 (2023-12-01)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.1.2 (2023-11-29)
@@ -42,6 +42,7 @@ Enhancements
 Bug fixes
 =========
 
+* 
 * read job_conf directly from `config_dir` instead of computing it again from `config_file` by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#15596 <https://github.com/galaxyproject/galaxy/pull/15596>`_
 * Fix some drs handling issues by `@nuwang <https://github.com/nuwang>`_ in `#15777 <https://github.com/galaxyproject/galaxy/pull/15777>`_
 * Fix filesource file url support by `@nuwang <https://github.com/nuwang>`_ in `#15794 <https://github.com/galaxyproject/galaxy/pull/15794>`_
@@ -97,6 +98,7 @@ Bug fixes
 Enhancements
 ============
 
+* 
 * Empower Users to Select Storage Destination by `@jmchilton <https://github.com/jmchilton>`_ in `#14073 <https://github.com/galaxyproject/galaxy/pull/14073>`_
 * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#15019 <https://github.com/galaxyproject/galaxy/pull/15019>`_
 * Add slack error reporting plugin by `@hexylena <https://github.com/hexylena>`_ in `#15025 <https://github.com/galaxyproject/galaxy/pull/15025>`_
@@ -182,6 +184,7 @@ Other changes
 Bug fixes
 =========
 
+* 
 * 
 * Fix upload paramfile handling (for real user setups) by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16504 <https://github.com/galaxyproject/galaxy/pull/16504>`_
 * Fix extra files path handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16541 <https://github.com/galaxyproject/galaxy/pull/16541>`_
@@ -196,6 +199,7 @@ Bug fixes
 Enhancements
 ============
 
+* 
 * 
 * Update pulsar client library to 0.15.5 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16701 <https://github.com/galaxyproject/galaxy/pull/16701>`_
 
@@ -208,6 +212,7 @@ Enhancements
 Bug fixes
 =========
 
+* 
 * 
 * 
 * Skip installing npm/yarn if available, fix conditional dependency parsing, create virtualenv via conda when conda active by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16403 <https://github.com/galaxyproject/galaxy/pull/16403>`_
@@ -226,6 +231,7 @@ Bug fixes
 * 
 * 
 * 
+* 
 * Fix default when statement evaluation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16332 <https://github.com/galaxyproject/galaxy/pull/16332>`_
 * Redact private role name and description when purging user by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16349 <https://github.com/galaxyproject/galaxy/pull/16349>`_
 
@@ -242,12 +248,14 @@ Bug fixes
 * 
 * 
 * 
+* 
 * Bump galaxy-release-util version to 0.1.2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16241 <https://github.com/galaxyproject/galaxy/pull/16241>`_
 
 ============
 Enhancements
 ============
 
+* 
 * 
 * 
 * When importing tool data bundles, use the first loc file for the matching table by `@natefoo <https://github.com/natefoo>`_ in `#16247 <https://github.com/galaxyproject/galaxy/pull/16247>`_
@@ -256,6 +264,7 @@ Enhancements
 Other changes
 =============
 
+* 
 * 
 * Forward port of slugify username received from oidc by `@nuwang <https://github.com/nuwang>`_ in `#16271 <https://github.com/galaxyproject/galaxy/pull/16271>`_
 
@@ -273,6 +282,7 @@ Bug fixes
 * 
 * 
 * 
+* 
 * Fix ``Text File Busy`` errors at the source by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16212 <https://github.com/galaxyproject/galaxy/pull/16212>`_
 
 ============
@@ -284,6 +294,7 @@ Enhancements
 * 
 * 
 * 
+* 
 * Point release deps fixes and docs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16214 <https://github.com/galaxyproject/galaxy/pull/16214>`_
 * Use galaxy-release-util to upload python packages by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16240 <https://github.com/galaxyproject/galaxy/pull/16240>`_
 
@@ -302,6 +313,7 @@ Bug fixes
 * 
 * 
 * 
+* 
 * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15744 <https://github.com/galaxyproject/galaxy/pull/15744>`_
 * Fix mixed outputs_to_working_directory pulsar destinations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15927 <https://github.com/galaxyproject/galaxy/pull/15927>`_
 * Update Gravity to 1.0.3 by `@natefoo <https://github.com/natefoo>`_ in `#15939 <https://github.com/galaxyproject/galaxy/pull/15939>`_
@@ -330,6 +342,7 @@ Other changes
 * 
 * 
 * 
+* 
 * Startup fix when tool removed between reboot by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16175 <https://github.com/galaxyproject/galaxy/pull/16175>`_
 
 -------------------

diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-app
 url = https://github.com/galaxyproject/galaxy
-version = 23.1.3.dev0
+version = 23.1.3
 
 [options]
 include_package_data = True

diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.1.3.dev0
------------
-
+-------------------
+23.1.3 (2023-12-01)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.1.2 (2023-11-29)

diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-auth
 url = https://github.com/galaxyproject/galaxy
-version = 23.1.3.dev0
+version = 23.1.3
 
 [options]
 include_package_data = True

diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.1.3.dev0
------------
-
+-------------------
+23.1.3 (2023-12-01)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.1.2 (2023-11-29)
@@ -36,6 +36,7 @@ Enhancements
 Bug fixes
 =========
 
+* 
 * Fix some drs handling issues by `@nuwang <https://github.com/nuwang>`_ in `#15777 <https://github.com/galaxyproject/galaxy/pull/15777>`_
 * Improve container resolver documentation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16280 <https://github.com/galaxyproject/galaxy/pull/16280>`_
 * Limit tool document cache to tool configs with explicit cache path by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16537 <https://github.com/galaxyproject/galaxy/pull/16537>`_
@@ -46,6 +47,7 @@ Bug fixes
 Enhancements
 ============
 
+* 
 * External Login Flow: Redirect users if account already exists by `@ahmedhamidawan <https://github.com/ahmedhamidawan>`_ in `#15019 <https://github.com/galaxyproject/galaxy/pull/15019>`_
 * Add slack error reporting plugin by `@hexylena <https://github.com/hexylena>`_ in `#15025 <https://github.com/galaxyproject/galaxy/pull/15025>`_
 * Documents use of k8s_extra_job_envs in job_conf sample advanced by `@pcm32 <https://github.com/pcm32>`_ in `#15110 <https://github.com/galaxyproject/galaxy/pull/15110>`_
@@ -89,6 +91,7 @@ No recorded changes since last release
 Bug fixes
 =========
 
+* 
 * 
 * Minor bug fix for default mail templates by `@neoformit <https://github.com/neoformit>`_ in `#16362 <https://github.com/galaxyproject/galaxy/pull/16362>`_
 
@@ -122,12 +125,14 @@ Bug fixes
 * 
 * 
 * 
+* 
 * Change default watchdog inotify_buffer log level to info by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15967 <https://github.com/galaxyproject/galaxy/pull/15967>`_
 
 ============
 Enhancements
 ============
 
+* 
 * 
 * Add ``ca_certs`` option for sentry client by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15943 <https://github.com/galaxyproject/galaxy/pull/15943>`_
 

diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-config
 url = https://github.com/galaxyproject/galaxy
-version = 23.1.3.dev0
+version = 23.1.3
 
 [options]
 include_package_data = True

diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst
@@ -3,11 +3,16 @@ History
 
 .. to_doc
 
------------
-23.1.3.dev0
------------
+-------------------
+23.1.3 (2023-12-01)
+-------------------
+
 
+=========
+Bug fixes
+=========
 
+* Add missing optional description field, fixes ephemeris data library example by `@mvdbeek <https://github.com/mvdbeek>`_ in `#17116 <https://github.com/galaxyproject/galaxy/pull/17116>`_
 
 -------------------
 23.1.2 (2023-11-29)
@@ -41,6 +46,7 @@ Enhancements
 Bug fixes
 =========
 
+* 
 * Fix bad auto-merge of dev. by `@jmchilton <https://github.com/jmchilton>`_ in `#15386 <https://github.com/galaxyproject/galaxy/pull/15386>`_
 * Merge conflicting db migration branches into one by `@jdavcs <https://github.com/jdavcs>`_ in `#15771 <https://github.com/galaxyproject/galaxy/pull/15771>`_
 * Enable ``strict_equality`` mypy option by `@nsoranzo <https://github.com/nsoranzo>`_ in `#15808 <https://github.com/galaxyproject/galaxy/pull/15808>`_
@@ -71,6 +77,7 @@ Bug fixes
 Enhancements
 ============
 
+* 
 * Empower Users to Select Storage Destination by `@jmchilton <https://github.com/jmchilton>`_ in `#14073 <https://github.com/galaxyproject/galaxy/pull/14073>`_
 * Add Storage Dashboard visualizations for histories by `@davelopez <https://github.com/davelopez>`_ in `#14820 <https://github.com/galaxyproject/galaxy/pull/14820>`_
 * Towards decoupling datatypes and model by `@jdavcs <https://github.com/jdavcs>`_ in `#15186 <https://github.com/galaxyproject/galaxy/pull/15186>`_
@@ -129,6 +136,7 @@ Other changes
 Bug fixes
 =========
 
+* 
 * 
 * Fix extra files path handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16541 <https://github.com/galaxyproject/galaxy/pull/16541>`_
 * Don't fail invocation message without dependent_workflow_step_id by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16628 <https://github.com/galaxyproject/galaxy/pull/16628>`_
@@ -142,6 +150,7 @@ Bug fixes
 Bug fixes
 =========
 
+* 
 * 
 * 
 * Copy when_expression when copying workflow step by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16377 <https://github.com/galaxyproject/galaxy/pull/16377>`_
@@ -176,6 +185,7 @@ Bug fixes
 * 
 * 
 * 
+* 
 * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15744 <https://github.com/galaxyproject/galaxy/pull/15744>`_
 * Fix folder listing via file browser by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15950 <https://github.com/galaxyproject/galaxy/pull/15950>`_
 * Fix RO-crate invocation export with complex collections by `@davelopez <https://github.com/davelopez>`_ in `#15971 <https://github.com/galaxyproject/galaxy/pull/15971>`_

diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-data
 url = https://github.com/galaxyproject/galaxy
-version = 23.1.3.dev0
+version = 23.1.3
 
 [options]
 include_package_data = True

diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.1.3.dev0
------------
-
+-------------------
+23.1.3 (2023-12-01)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.1.2 (2023-11-29)
@@ -29,6 +29,7 @@ Bug fixes
 Bug fixes
 =========
 
+* 
 * Fix some drs handling issues by `@nuwang <https://github.com/nuwang>`_ in `#15777 <https://github.com/galaxyproject/galaxy/pull/15777>`_
 * Fix filesource file url support by `@nuwang <https://github.com/nuwang>`_ in `#15794 <https://github.com/galaxyproject/galaxy/pull/15794>`_
 * Fix unittest mocks to support us checking geturl()  by `@dannon <https://github.com/dannon>`_ in `#16726 <https://github.com/galaxyproject/galaxy/pull/16726>`_
@@ -73,6 +74,7 @@ No recorded changes since last release
 Bug fixes
 =========
 
+* 
 * 
 * Fix dropbox import to support newer versions by `@nuwang <https://github.com/nuwang>`_ in `#16239 <https://github.com/galaxyproject/galaxy/pull/16239>`_
 

diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-files
 url = https://github.com/galaxyproject/galaxy
-version = 23.1.3.dev0
+version = 23.1.3
 
 [options]
 include_package_data = True

diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.1.3.dev0
------------
-
+-------------------
+23.1.3 (2023-12-01)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.1.2 (2023-11-29)
@@ -31,6 +31,7 @@ Bug fixes
 Bug fixes
 =========
 
+* 
 * Fix tags ownership by `@davelopez <https://github.com/davelopez>`_ in `#16339 <https://github.com/galaxyproject/galaxy/pull/16339>`_
 * Push to object store even if ``set_meta`` fails by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16667 <https://github.com/galaxyproject/galaxy/pull/16667>`_
 * Fix metadata setting in extended metadata + outputs_to_working_directory mode by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16678 <https://github.com/galaxyproject/galaxy/pull/16678>`_
@@ -59,6 +60,7 @@ Enhancements
 Bug fixes
 =========
 
+* 
 * 
 * Fix extra files path handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16541 <https://github.com/galaxyproject/galaxy/pull/16541>`_
 * Make sure job_wrapper uses a consistent metadata strategy by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16569 <https://github.com/galaxyproject/galaxy/pull/16569>`_

diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-job-execution
 url = https://github.com/galaxyproject/galaxy
-version = 23.1.3.dev0
+version = 23.1.3
 
 [options]
 include_package_data = True

diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.1.3.dev0
------------
-
+-------------------
+23.1.3 (2023-12-01)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.1.2 (2023-11-29)

diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-job-metrics
 url = https://github.com/galaxyproject/galaxy
-version = 23.1.3.dev0
+version = 23.1.3
 
 [options]
 include_package_data = True