Create version 23.0.6

galaxyproject · Oct 23, 2023 · bce8be2 · bce8be2
1 parent b54e7a7
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Showing 39 changed files with 160 additions and 89 deletions.
diff --git a/lib/galaxy/version.py b/lib/galaxy/version.py
@@ -1,3 +1,3 @@
 VERSION_MAJOR = "23.0"
-VERSION_MINOR = "6.dev0"
+VERSION_MINOR = "6"
 VERSION = VERSION_MAJOR + (f".{VERSION_MINOR}" if VERSION_MINOR else "")
diff --git a/packages/app/HISTORY.rst b/packages/app/HISTORY.rst
@@ -3,11 +3,29 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
+-------------------
+23.0.6 (2023-10-23)
+-------------------
 
 
+=========
+Bug fixes
+=========
+
+* Fix upload paramfile handling (for real user setups) by `@bernt-matthias <https://github.com/bernt-matthias>`_ in `#16504 <https://github.com/galaxyproject/galaxy/pull/16504>`_
+* Fix extra files path handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16541 <https://github.com/galaxyproject/galaxy/pull/16541>`_
+* Make sure job_wrapper uses a consistent metadata strategy by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16569 <https://github.com/galaxyproject/galaxy/pull/16569>`_
+* Fix conditional step evaluation with datasets in repeats by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16584 <https://github.com/galaxyproject/galaxy/pull/16584>`_
+* Don't read request body into memory by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16585 <https://github.com/galaxyproject/galaxy/pull/16585>`_
+* Fixes for extra files handling and cached object stores  by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16595 <https://github.com/galaxyproject/galaxy/pull/16595>`_
+* Lazy load tool data tables in celery worker by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16640 <https://github.com/galaxyproject/galaxy/pull/16640>`_
+* Force `__DUPLICATE_FILE_TO_COLLECTION__` 'size' param to integer by `@simonbray <https://github.com/simonbray>`_ in `#16659 <https://github.com/galaxyproject/galaxy/pull/16659>`_
+
+============
+Enhancements
+============
+
+* Update pulsar client library to 0.15.5 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16701 <https://github.com/galaxyproject/galaxy/pull/16701>`_
 
 -------------------
 23.0.5 (2023-07-29)
@@ -31,6 +49,7 @@ Bug fixes
 Bug fixes
 =========
 
+* 
 * Fix default when statement evaluation by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16332 <https://github.com/galaxyproject/galaxy/pull/16332>`_
 * Redact private role name and description when purging user by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16349 <https://github.com/galaxyproject/galaxy/pull/16349>`_
 
@@ -43,6 +62,7 @@ Bug fixes
 Bug fixes
 =========
 
+* 
 * 
 * Bump galaxy-release-util version to 0.1.2 by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16241 <https://github.com/galaxyproject/galaxy/pull/16241>`_
 
@@ -67,6 +87,7 @@ Other changes
 Bug fixes
 =========
 
+* 
 * 
 * 
 * Fix ``Text File Busy`` errors at the source by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16212 <https://github.com/galaxyproject/galaxy/pull/16212>`_
@@ -75,6 +96,7 @@ Bug fixes
 Enhancements
 ============
 
+* 
 * 
 * 
 * Point release deps fixes and docs by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16214 <https://github.com/galaxyproject/galaxy/pull/16214>`_
@@ -92,6 +114,7 @@ Bug fixes
 * 
 * 
 * 
+* 
 * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15744 <https://github.com/galaxyproject/galaxy/pull/15744>`_
 * Fix mixed outputs_to_working_directory pulsar destinations by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15927 <https://github.com/galaxyproject/galaxy/pull/15927>`_
 * Update Gravity to 1.0.3 by `@natefoo <https://github.com/natefoo>`_ in `#15939 <https://github.com/galaxyproject/galaxy/pull/15939>`_
@@ -115,6 +138,7 @@ Bug fixes
 Other changes
 =============
 
+* 
 * 
 * 
 * Startup fix when tool removed between reboot by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16175 <https://github.com/galaxyproject/galaxy/pull/16175>`_

diff --git a/packages/app/setup.cfg b/packages/app/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-app
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True

diff --git a/packages/auth/HISTORY.rst b/packages/auth/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
-
+-------------------
+23.0.6 (2023-10-23)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.0.5 (2023-07-29)

diff --git a/packages/auth/setup.cfg b/packages/auth/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-auth
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True

diff --git a/packages/config/HISTORY.rst b/packages/config/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
-
+-------------------
+23.0.6 (2023-10-23)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.0.5 (2023-07-29)
@@ -47,6 +47,7 @@ No recorded changes since last release
 Bug fixes
 =========
 
+* 
 * Change default watchdog inotify_buffer log level to info by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15967 <https://github.com/galaxyproject/galaxy/pull/15967>`_
 
 ============

diff --git a/packages/config/setup.cfg b/packages/config/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-config
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True

diff --git a/packages/data/HISTORY.rst b/packages/data/HISTORY.rst
@@ -3,11 +3,17 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
+-------------------
+23.0.6 (2023-10-23)
+-------------------
+
 
+=========
+Bug fixes
+=========
 
+* Fix extra files path handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16541 <https://github.com/galaxyproject/galaxy/pull/16541>`_
+* Don't fail invocation message without dependent_workflow_step_id by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16628 <https://github.com/galaxyproject/galaxy/pull/16628>`_
 
 -------------------
 23.0.5 (2023-07-29)
@@ -47,6 +53,7 @@ No recorded changes since last release
 Bug fixes
 =========
 
+* 
 * Display DCE in job parameter component, allow rerunning with DCE input by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15744 <https://github.com/galaxyproject/galaxy/pull/15744>`_
 * Fix folder listing via file browser by `@mvdbeek <https://github.com/mvdbeek>`_ in `#15950 <https://github.com/galaxyproject/galaxy/pull/15950>`_
 * Fix RO-crate invocation export with complex collections by `@davelopez <https://github.com/davelopez>`_ in `#15971 <https://github.com/galaxyproject/galaxy/pull/15971>`_

diff --git a/packages/data/setup.cfg b/packages/data/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-data
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True

diff --git a/packages/files/HISTORY.rst b/packages/files/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
-
+-------------------
+23.0.6 (2023-10-23)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.0.5 (2023-07-29)

diff --git a/packages/files/setup.cfg b/packages/files/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-files
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True

diff --git a/packages/job_execution/HISTORY.rst b/packages/job_execution/HISTORY.rst
@@ -3,11 +3,18 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
+-------------------
+23.0.6 (2023-10-23)
+-------------------
+
 
+=========
+Bug fixes
+=========
 
+* Fix extra files path handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16541 <https://github.com/galaxyproject/galaxy/pull/16541>`_
+* Make sure job_wrapper uses a consistent metadata strategy by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16569 <https://github.com/galaxyproject/galaxy/pull/16569>`_
+* Fixes for extra files handling and cached object stores  by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16595 <https://github.com/galaxyproject/galaxy/pull/16595>`_
 
 -------------------
 23.0.5 (2023-07-29)

diff --git a/packages/job_execution/setup.cfg b/packages/job_execution/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-job-execution
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True

diff --git a/packages/job_metrics/HISTORY.rst b/packages/job_metrics/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
-
+-------------------
+23.0.6 (2023-10-23)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.0.5 (2023-07-29)

diff --git a/packages/job_metrics/setup.cfg b/packages/job_metrics/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-job-metrics
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True

diff --git a/packages/navigation/HISTORY.rst b/packages/navigation/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
-
+-------------------
+23.0.6 (2023-10-23)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.0.5 (2023-07-29)

diff --git a/packages/navigation/setup.cfg b/packages/navigation/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-navigation
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True

diff --git a/packages/objectstore/HISTORY.rst b/packages/objectstore/HISTORY.rst
@@ -3,11 +3,17 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
+-------------------
+23.0.6 (2023-10-23)
+-------------------
+
 
+=========
+Bug fixes
+=========
 
+* Fix extra files path handling by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16541 <https://github.com/galaxyproject/galaxy/pull/16541>`_
+* Fixes for extra files handling and cached object stores  by `@mvdbeek <https://github.com/mvdbeek>`_ in `#16595 <https://github.com/galaxyproject/galaxy/pull/16595>`_
 
 -------------------
 23.0.5 (2023-07-29)

diff --git a/packages/objectstore/setup.cfg b/packages/objectstore/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-objectstore
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True

diff --git a/packages/selenium/HISTORY.rst b/packages/selenium/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
-
+-------------------
+23.0.6 (2023-10-23)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.0.5 (2023-07-29)
@@ -50,6 +50,7 @@ Enhancements
 * 
 * 
 * 
+* 
 * Add support for launching workflows via Tutorial Mode by `@hexylena <https://github.com/hexylena>`_ in `#15684 <https://github.com/galaxyproject/galaxy/pull/15684>`_
 
 -------------------

diff --git a/packages/selenium/setup.cfg b/packages/selenium/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-selenium
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True

diff --git a/packages/test_api/HISTORY.rst b/packages/test_api/HISTORY.rst
@@ -3,11 +3,11 @@ History
 
 .. to_doc
 
------------
-23.0.6.dev0
------------
-
+-------------------
+23.0.6 (2023-10-23)
+-------------------
 
+No recorded changes since last release
 
 -------------------
 23.0.5 (2023-07-29)

diff --git a/packages/test_api/setup.cfg b/packages/test_api/setup.cfg
@@ -27,7 +27,7 @@ long_description = file: README.rst, HISTORY.rst
 long_description_content_type = text/x-rst
 name = galaxy-test-api
 url = https://github.com/galaxyproject/galaxy
-version = 23.0.6.dev0
+version = 23.0.6
 
 [options]
 include_package_data = True