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46 Open 628 Closed
46 Open 628 Closed
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Issues list

Calling genotypes using RNA-seq data
#797 opened Apr 20, 2024 by desmodus1984
Improving freebayes Performance for Nanopore Sequencing Data
#795 opened Apr 16, 2024 by QuentinPerriere
1
Incongruencies in GT assignment bug
#793 opened Apr 4, 2024 by Virginia-b
1
frequency of each variant per sample
#792 opened Apr 3, 2024 by emilydolivo97
2
variant calling
#791 opened Apr 2, 2024 by DaliBAmor
2
Error during freebayes call for one single chromosome
#790 opened Mar 31, 2024 by floro5
1
vcffirstheader broken pipe freebayes-parallel bug
#789 opened Mar 28, 2024 by ericmalekos
1
Multiple bases returned instead of SNPs in one of the two replicates bug
#787 opened Mar 25, 2024 by NitKV
freebayes did not report variants with AC < 4? bug
#785 opened Mar 11, 2024 by yzliu01
incorrect GQ type bug
#784 opened Mar 6, 2024 by cmatKhan
Overlapping read pairs question
#783 opened Feb 17, 2024 by emmecola
Very high QUAL values
#782 opened Feb 8, 2024 by mbhall88
Inexplicably low DP values bug
#781 opened Jan 31, 2024 by jpalmer37
2
Genotype read percentages
#780 opened Jan 23, 2024 by ceromova
parallelization of coverage_to_regions.py
#779 opened Jan 12, 2024 by husamia
Actual full name arguments for -iXU don't seem to match --help bug
#778 opened Dec 5, 2023 by G3N0M3
freebayes does not work with low values of --min-alternate-fraction 0 bug
#777 opened Nov 6, 2023 by friburgo-moc
BA.2.86 SRR25750759 ins21608 call surprisingly dependent --min-alternate-fraction parameter bug
#775 opened Sep 6, 2023 by krobison13
2
Aborted (core dumped) bug
#771 opened Jun 12, 2023 by suhuanhou
pre-built binary not available bug
#770 opened Jun 10, 2023 by vappiah
3
Cannot install freebayes with conda bug
#769 opened Jun 8, 2023 by i-guigon
3
genotype calling are not consistent with RO and AO number bug
#768 opened May 17, 2023 by suncpark
1
ARM NEON build fails: undefined reference to rans_compress_O0_32x16_neon in bundled htslib bug
#767 opened Apr 26, 2023 by buildmaster0
3
Error: signal 11: when using parallel --targets bug
#764 opened Feb 9, 2023 by mlarjim
4
Freebayes occasionally incorrectly genotyping large deletions bug
#763 opened Jan 23, 2023 by Coryza
1
ProTip! What’s not been updated in a month: updated:<2024-04-04.