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add tool: f5c (methylation) #47

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fmalmeida opened this issue Jan 21, 2022 · 0 comments
Open

add tool: f5c (methylation) #47

fmalmeida opened this issue Jan 21, 2022 · 0 comments
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enhancement New feature or request

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@fmalmeida
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Add to the pipeline the new tool called f5c which is a reimplementation of Nanopolish and is much faster. Add this tool, but not replace nanopolish. Instead, make the pipeline run f5c or Nanopolish (or both) depending on user's desire, with something like: --nanopolish_fast5 <fast5 dir> to run with Nanopolish or --f5c_fast5 <fast5 dir> to run with f5c.

Finally, add a report for methylations with pycoMeth

@fmalmeida fmalmeida added the enhancement New feature or request label Mar 26, 2022
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