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add a sourmash module #30

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fmalmeida opened this issue Oct 30, 2021 · 1 comment
Open
2 of 3 tasks

add a sourmash module #30

fmalmeida opened this issue Oct 30, 2021 · 1 comment
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@fmalmeida
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enhancement New feature or request
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Release v3.3

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@fmalmeida
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fmalmeida commented Oct 30, 2021 •
edited

Add an additional module for scanning the sample using sourmash:

  • scan against refseq using whole genome (LCA)
  • an option to create a simple phylogeny using sourmash against the N closest genomes detected in the pipeline using refseq_masher module or against genomes provided by user in a directory
  • Include results in HTML reports
@fmalmeida fmalmeida mentioned this issue Nov 11, 2021
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@fmalmeida fmalmeida added the enhancement New feature or request label Mar 26, 2022
@fmalmeida fmalmeida mentioned this issue May 19, 2023
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@fmalmeida fmalmeida self-assigned this May 19, 2023
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Just missing addition in the reports.

@fmalmeida fmalmeida added this to Issues for release. in Release v3.3 Jul 24, 2023
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enhancement New feature or request
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Release v3.3
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30-add-a-sourmash-module fmalmeida/bacannot
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