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Updated readme for new data.
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filipsPL committed Mar 22, 2023
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Expand Up @@ -13,6 +13,10 @@ Data accompanying the manuscript on SIFts- and ML-based methods in Virtual Scree
- [2-docking\_poses](#2-docking_poses)
- [3-rescoring](#3-rescoring)
- [4-SIFts+activity](#4-siftsactivity)
- [4-SIFts+activity-arff](#4-siftsactivity-arff)
- [4-SIFts+activity-csv](#4-siftsactivity-csv)
- [5-results](#5-results)
- [6-HIV-structures](#6-hiv-structures)
- [Feedback, issues, and questions](#feedback-issues-and-questions)
- [How to cite](#how-to-cite)
- [Funding](#funding)
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│   │   └── withZeros_basicInteractionsNoLipo.csv.gz
```

## 4-SIFts+activity-arff

Data formatted for [Weka](https://www.cs.waikato.ac.nz/~ml/weka/) (average for 3 best poses, 3 structures, with zeros, all interactions).

## 4-SIFts+activity-csv

Auxiliary csv files (average for 3 best poses, 3 structures, with zeros, all interactions).

## 5-results

Raw and compiled ML results. All results are combined in `_collected_ml_results.csv`.

## 6-HIV-structures

Data for SIFts composed from seven RNA structures, to investigate the influence of number of structures on the ML accuracy. Raw data, results, and figures.

![fig](data/6-HIV-structures/S1-B+C.png)



# Feedback, issues, and questions

We welcome any feedback, please send an email to Filip Stefaniak ![](https://img.shields.io/badge/fstefaniak-%40iimcb.gov.pl-red) or Natalia Szulc ![](https://img.shields.io/badge/nszulc-%40iimcb.gov.pl-brightgreen)
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