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@evolbioinfo

Evolutionary Bioinformatics

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  1. gotree gotree Public

    Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

    Go 110 15

  2. goalign goalign Public

    Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

    Go 62 8

  3. booster booster Public

    C 24 3

  4. pastml pastml Public

    Ancestral character reconstruction and visualisation for rooted phylogenetic trees

    Python 26 6

  5. dockerfiles dockerfiles Public

    Dockerfiles for tools commonly used for phylogenetic analyses

    Dockerfile 8 9

  6. phylodeep phylodeep Public

    PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

    Python 18 5

Repositories

Showing 10 of 23 repositories
  • gotree Public

    Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.

    Go 110 GPL-2.0 15 4 0 Updated Apr 29, 2024
  • goalign Public

    Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.

    Go 62 GPL-2.0 8 2 0 Updated Apr 3, 2024
  • dockerfiles Public

    Dockerfiles for tools commonly used for phylogenetic analyses

    Dockerfile 8 9 0 0 Updated Apr 2, 2024
  • pastml Public

    Ancestral character reconstruction and visualisation for rooted phylogenetic trees

    Python 26 GPL-3.0 6 9 0 Updated Feb 26, 2024
  • condor Public Forked from mariemorel/condor

    ConDor: a workflow to detect convergent evolution in large protein alignments

    Python 1 3 0 0 Updated Jan 29, 2024
  • condor-analysis Public Forked from mariemorel/condor-analysis

    Files and scripts from ConDor analysis

    Jupyter Notebook 1 1 0 0 Updated Jan 28, 2024
  • Python 1 GPL-3.0 0 0 0 Updated Jan 15, 2024
  • HIV1-UK Public

    Analysis of drug resistance mutation patterns in the UK

    HTML 0 0 0 0 Updated Dec 19, 2023
  • bdei Public

    Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees

    Python 2 LGPL-2.1 0 0 0 Updated Dec 6, 2023
  • phylodeep Public

    PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

    Python 18 5 1 1 Updated Sep 29, 2023

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