2.0.2

SCpbur v2.0.2

General.

• Fixed a bug that prevented error messages stating the dependencies missing per function to show up properly.
• Fixed assumptions on Seurat v4 and v5 and reverted to the use of cannonical GetAssayData and SetAssayData functions.
• Fixed dependency problems with archived packages.

do_BeeSwarmPlot()

• Changed default continuous palette to YlGnBu.
• Changed default legend title to feature_to_rank if continous_feature = TRUE.
• Changed default value of sequential.direction to 1.
• Changed default value of legend.position to bottom when continuous_feature = FALSE.

do_BoxPlot()

• Changed default value of legend.position to bottom.
• Fixed a bug in which legend key glyphs would not show up when using use_silhouette = TRUE.

do_CopyNumberVariantPlot()

• Fixed an issue in which using min.cutoff or max.cutoff would render the values outside these bounds to NA and therefore being plotted as grey. Now they will have the highest/lowest value possible.

do_FeaturePlot()

• Added symmetry.type parameter, that allows to control how the symmetry is computed: either in absolute values (taking into account the highest and lowest value) or in the middle point specified by symmetry.center.
• Added symmetry.center parameter, that allows to control the center of symmetry when symmetry.type is set to centered.

do_ViolinPlot()

• Changed default value of legend.position to bottom.
• Fixed a bug in which the default color palette would not be applied when plot_boxplots = FALSE.
• Added legend.title.position parameter and set it up as top by default.