ejfresch/qdc
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QDC (quick direct-method controlled) is an optimized exact implementation of the Gillespie's direct-method. It is designed for biochemical simulations when there is the need of dynamic parameters whose values can change during the simulation. CHANGELOG: 2.0.0 -debug mode -a log file (<model_name>_log.txt) is generated at each run -stop conditions block: the user can set up conditions to stop the simulation at a specific time point or when the number of molecules of a species reaches a threshold. 1.3.6 -fixed bug in .csv results file generation 1.3.5 -fixed bug libsbml_wrap.cpp (installer) -the installer works on Ubuntu 11.10 -fixed bug path libsbml in validateSBML.py 1.3.4 -addition of a guide file pdf for the UI -introduced several new controls in the parsing stage -fixed type size check bug -fixed instant reaction chained execution bug -modified the selection algorithm for the instant reaction to execute if multiple are selectable: from the selection of the first parsed to the selection of a random one -fixed a bug for an incorrect data.reactioncounts header line for some instant reaction
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