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Bacting 1.0.0

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@egonw egonw released this 11 May 13:52
bacting-1.0.0
3764b45

DOI

Major release which completes the original goal: to have the basic Bioclipse 2.6 functionality available on the command line. Includes a bug fix by setting the expected content type of returned SPARQL query results. New functionality includes additional ported CDKDebugManager code from Bioclipse, and a new BioclipseManager method for remote SPARQLing with additional HTTP headers. Also updates various dependencies to their latest versions, including CMLXOM, Log4j, Guava, and JSON.

Core managers

  • bioclipse.sparqlRemote(endpoint, sparql. headers) to query a SPARQL endpoint and get a raw XML reply

Cheminformatics managers

  • cdk.getProperty(IMolecule, Object) and cdk.setProperty(IMolecule, Object. Object)
  • chemspider.loadCompound(csid, target) to download the chemical structure of a ChemSpider record

Semweb managers

  • rdf.allClasses(store)
  • rdf.allPredicates(store)
  • xml.validate(file)

Full Changelog: bacting-0.5.2...bacting-1.0.0

Assets 2