Copernicus In Situ Component Information System

The Copernicus In-Situ Coordination (GISC) project aimed at linking in-situ data providers and Copernicus service providers to ensure access to in-situ data for Copernicus services.

The application provides up-to-date information across the Copernicus services on in situ data requirements (current and expected), data used, gaps, data providers, access arrangements, and partnerships.

Prerequisites

• Install Docker
• Install Docker Compose

Installing the application

1. Get the source code:

    git clone https://github.com/eea/copernicus-insitu-db.git
    cd copernicus-insitu-db
   

2. Start application stack:

    docker-compose up -d
    docker-compose ps
   

3. Run migrations, create superuser:

    docker exec -it insitu.app sh
    python manage.py migrate
    python manage.py createsuperuser
   

4. Create SQL views:

    docker cp docker/create_views.sql insitu.db:create_views.sql
    docker exec -it insitu.db bash
    psql -U [psql_username] [psql_database] < create_views.sql
   

5. Create elasticsearch index and start the development server:

    python manage.py search_index -f --rebuild
    python manage.py runserver 0.0.0.0:8000
   

6. Run tests:

    docker exec -it insitu.app sh
    python manage.py test --settings=copernicus.test_settings
   

7. Check coverage:

    docker exec -it insitu.app sh
    coverage run --source='.' ./manage.py test --settings=copernicus.test_settings
    python coverage html
   

8. See it in action: http://localhost:8000

Upgrading the application

1. Get the latest version of source code:

    cd copernicus-insitu-db
    git pull origin master
   

2. Update the application stack, all services should be "Up":

    docker-compose pull
    docker-compose up -d
    docker-compose ps
   

3. See it in action: http://localhost:8000

Debugging

Customize docker orchestration for local development:

    cp docker-compose.override.yml.example docker-compose.override.yml

• Please make sure that DEBUG = True in the settings.

• Update docker-compose.override.yml file app section with the following so that docker-entrypoint.sh is not executed:

    entrypoint: ["/usr/bin/tail", "-f", "/dev/null"]
  

• Attach to docker container and start the server in debug mode:

    docker exec -it insitu.app sh
    python manage.py runserver 0.0.0.0:8000
  

• See it in action: http://localhost:8000

Set User roles

• Read-Only User
  • create a new regular user and add the user group "ReadOnly"
• ProductEditor
  • create a new regular user and add the user group "ProductEditor"
• PicklistsEditor
  • create a new staff user and add the user group "PicklistsEditor"

Ubuntu elasticsearch container error

• If your host runs ubuntu your elasticsearch container may fail to run with the error "bootstrap checks failed". This happens because max map count is set under the value 262144

• You can fix this temporarily(till you restart your machine) by running:

    sudo sysctl -w vm.max_map_count=262144
  

• You can fix this permanently by modifying your max_map_count file:

    sudo vim /proc/sys/vm/max_map_count
    # Change the value from the file with 262144 and save
  

Save to fixtures explorer queries

    python manage.py dumpdata explorer.query > explorer.json

To install

Generate Sphinx documentation

    cd docs/
    make html

After the documentation has changed, a new PDF file should be generated and it should replace the current file.

    docker exec -it insitu.app sh
    apk add texlive-full
    cd docs/
    make latexpdf
    cp _build/latex/CIS2.pdf ../insitu/static/docs/CIS2.pdf