{bio}[foss/2023a] SCRIPro v1.0.18

easybuild/easyconfigs/s/SCRIPro/SCRIPro-1.0.18-foss-2023a.eb

@@ -0,0 +1,69 @@
+easyblock = 'PythonBundle'
+
+name = 'SCRIPro'
+version = '1.0.18'
+local_commit = 'e9087fd'
+
+homepage = 'https://github.com/xuyunfan9991/SCRIPro'
+description = "SCRIPro, an extended framework of SCRIP that suits both single-cell and spatial multi-ome data"
+
+toolchain = {'name': 'foss', 'version': '2023a'}
+
+dependencies = [
+    ('Python', '3.11.3'),
+    ('Python-bundle-PyPI', '2023.06'),
+    ('SciPy-bundle', '2023.07'),
+    ('matplotlib', '3.7.2'),
+    ('h5py', '3.9.0'),
+    ('scanpy', '1.9.8'),
+    ('Seaborn', '0.13.2'),
+    ('PyTables', '3.8.0'),
+    ('tqdm', '4.66.1'),
+    ('dill', '0.3.7'),
+    ('leidenalg', '0.10.2'),
+    ('PyTorch', '2.1.2'),
+    ('PyTorch-bundle', '2.1.2'),  # provides PyTorch-Ignite
+    ('tensorboardX', '2.6.2.2'),
+    ('pybedtools', '0.9.1'),
+    ('jupyter-server', '2.7.2'),  # ipywidgets
+]
+
+use_pip = True
+
+exts_list = [
+    ('lisa2', '2.3.2', {
+        'checksums': ['dc9df3495322c94f93c12372fb8d88d355447f7b8b69ea639394fc6274e9affb'],
+        'modulename': 'lisa',
+    }),
+    ('parse', '1.20.1', {
+        'checksums': ['09002ca350ad42e76629995f71f7b518670bcf93548bdde3684fd55d2be51975'],
+    }),
+    ('pynvml', '11.5.0', {
+        'checksums': ['d027b21b95b1088b9fc278117f9f61b7c67f8e33a787e9f83f735f0f71ac32d0'],
+    }),
+    ('sparse', '0.15.1', {
+        'checksums': ['973adcb88a8db8e3d8047953331e26d3f64a5657f9b46a6b859c47663c3eef99'],
+        # replace use of 'version_file' (which requires setuptools-scm >= 8.0) with 'write_to'
+        'preinstallopts': "sed -i 's/^version_file/write_to/' pyproject.toml && ",
+    }),
+    ('scglue', '0.3.2', {
+        'checksums': ['fd57ebfa400233cbb1ab4fab4ad6a9dbf4db2c5ca715ba31c71c7a36cc931241'],
+    }),
+    ('scripro', version, {
+        'preinstallopts': "sed -i 's/==/>=/g' requirements.txt && ",
+        'source_urls': ['https://github.com/xuyunfan9991/SCRIPro/archive'],
+        'sources': [{'download_filename': 'e9087fd.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}],
+        'checksums': ['6636c31f3f5797d33d57a5d0266c89f80cc37389dd9c139806b4d17ecad74252'],
+    }),
+]
+
+sanity_pip_check = True
+
+sanity_check_paths = {
+    'files': ['bin/scripro'],
+    'dirs': ['lib/python%(pyshortver)s/site-packages'],
+}
+
+sanity_check_commands = ["scripro --help"]
+
+moduleclass = 'bio'