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Merge pull request #16461 from easybuilders/4.6.x
release EasyBuild 4.6.2
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,34 @@ | ||
| name = 'ABAQUS' | ||
| version = '2022' | ||
| local_hotfix = '2223' | ||
| versionsuffix = '-hotfix-%s' % local_hotfix | ||
|
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| homepage = 'https://www.simulia.com/products/abaqus_fea.html' | ||
| description = """Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit | ||
| dynamics FEA.""" | ||
|
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| toolchain = SYSTEM | ||
|
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| sources = [ | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.1-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.2-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.3-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.4-5.tar', | ||
| '%(version)s.AM_SIM_Abaqus_Extend.AllOS.5-5.tar', | ||
| # hotfixes | ||
| '%%(version)s.FP.CFA.%s.Part_SIMULIA_EstPrd.Linux64.tar' % local_hotfix, | ||
| '%%(version)s.FP.CFA.%s.Part_SIMULIA_FlexNet.Linux64.tar' % local_hotfix, | ||
| ] | ||
| checksums = [ | ||
| '9025c9bc2d0345c13d96e88c1c422b1979a14bf7ba281bd32dfe093c1446945d', # 2022.AM_SIM_Abaqus_Extend.AllOS.1-5.tar | ||
| '14c23b3fdfddb723d84a02eb27edc25162e1d27e8fdce053193f72d28ff0a12c', # 2022.AM_SIM_Abaqus_Extend.AllOS.2-5.tar | ||
| '561d54d688ea2f2dcf329701e20502642aecf5526eb56db3a586cbcadfbf20fb', # 2022.AM_SIM_Abaqus_Extend.AllOS.3-5.tar | ||
| 'c085066ae2df68c9c61ea345808042ddb205c642d649f1ec3b7db4aaffb3d544', # 2022.AM_SIM_Abaqus_Extend.AllOS.4-5.tar | ||
| 'bfbc2c1a402881308f68f054e1e376fe153053b4287018ddbc80e76710f6969f', # 2022.AM_SIM_Abaqus_Extend.AllOS.5-5.tar | ||
| # 2022.FP.CFA.2223.Part_SIMULIA_EstPrd.Linux64.tar | ||
| 'bb05b07072ded86944eb44908875e6813c6ea18b2e6ab4dc7f8ef1ef368851e2', | ||
| # 2022.FP.CFA.2223.Part_SIMULIA_FlexNet.Linux64.tar | ||
| '32895726d409af8f7055b0f2bad53d10e7c32e36712e3eda8ff860f02622ee6f', | ||
| ] | ||
|
|
||
| moduleclass = 'cae' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,35 @@ | ||
| easyblock = 'MakeCp' | ||
|
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| name = 'ACTC' | ||
| version = '1.1' | ||
|
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| homepage = 'https://sourceforge.net/projects/actc' | ||
| description = "ACTC converts independent triangles into triangle strips or fans." | ||
|
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| toolchain = {'name': 'GCCcore', 'version': '11.3.0'} | ||
| toolchainopts = {'pic': True} | ||
|
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| source_urls = [SOURCEFORGE_SOURCE] | ||
| sources = [SOURCELOWER_TAR_GZ] | ||
| checksums = ['3a1303291629b9de6008c3c9d7b020a4b854802408fb3f8222ec492808c8b44d'] | ||
|
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| builddependencies = [('binutils', '2.38')] | ||
|
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| buildopts = 'CC="$CC" CFLAGS="$CFLAGS"' | ||
|
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| files_to_copy = [ | ||
| (['tcsample', 'tctest', 'tctest2'], 'bin'), | ||
| (['tc.h'], 'include/ac'), | ||
| (['libactc.a'], 'lib'), | ||
| 'COPYRIGHT', 'manual.html', 'prims.gif', 'README', | ||
| ] | ||
|
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| sanity_check_paths = { | ||
| 'files': ['bin/tctest', 'bin/tctest2', 'bin/tcsample', 'include/ac/tc.h', 'lib/libactc.a', | ||
| 'COPYRIGHT', 'manual.html', 'prims.gif', 'README'], | ||
| 'dirs': [], | ||
| } | ||
|
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| modextrapaths = {'CPATH': 'include/ac'} | ||
|
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| moduleclass = 'lib' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,68 @@ | ||
| # easybuild easyconfig | ||
| # | ||
| # John Dey <jfdey@fredhutch.org> Fred Hutchinson Cancer Center | ||
| # | ||
| easyblock = 'Bundle' | ||
|
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| name = 'AGAT' | ||
| version = '0.9.2' | ||
|
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| homepage = 'https://agat.readthedocs.io/en/latest/' | ||
| description = """AGAT: Another GTF/GFF Analysis Toolkit. Suite of tools to handle gene annotations | ||
| in any GTF/GFF format.""" | ||
|
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| toolchain = {'name': 'GCC', 'version': '11.2.0'} | ||
|
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| builddependencies = [('binutils', '2.37')] | ||
|
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| dependencies = [ | ||
| ('Perl', '5.34.0'), | ||
| ('BioPerl', '1.7.8'), | ||
| ] | ||
|
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| exts_defaultclass = 'PerlModule' | ||
| exts_filter = ("perl -e 'require %(ext_name)s'", '') | ||
|
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| exts_list = [ | ||
| ('Set::Object', '1.42', { | ||
| 'source_tmpl': 'Set-Object-%(version)s.tar.gz', | ||
| 'source_urls': ['https://cpan.metacpan.org/authors/id/R/RU/RURBAN'], | ||
| 'checksums': ['d18c5a8a233eabbd0206cf3da5b00fcdd7b37febf12a93dcc3d1c026e6fdec45'], | ||
| }), | ||
| ('File::Share', '0.27', { | ||
| 'source_tmpl': 'File-Share-%(version)s.tar.gz', | ||
| 'source_urls': ['https://cpan.metacpan.org/authors/id/I/IN/INGY'], | ||
| 'checksums': ['d6e8f4b55ebd38e0bb45e44392e3fa27dc1fde16abc5d1ff53e157e19a5755be'], | ||
| }), | ||
| ('Sort::Naturally', '1.03', { | ||
| 'source_tmpl': 'Sort-Naturally-%(version)s.tar.gz', | ||
| 'source_urls': ['https://cpan.metacpan.org/authors/id/B/BI/BINGOS'], | ||
| 'checksums': ['eaab1c5c87575a7826089304ab1f8ffa7f18e6cd8b3937623e998e865ec1e746'], | ||
| }), | ||
| ('Class::MethodMaker', '2.24', { | ||
| 'source_tmpl': 'Class-MethodMaker-%(version)s.tar.gz', | ||
| 'source_urls': ['https://cpan.metacpan.org/authors/id/S/SC/SCHWIGON/class-methodmaker'], | ||
| 'checksums': ['5eef58ccb27ebd01bcde5b14bcc553b5347a0699e5c3e921c7780c3526890328'], | ||
| }), | ||
| ('Term::ProgressBar', '2.22', { | ||
| 'source_tmpl': 'Term-ProgressBar-%(version)s.tar.gz', | ||
| 'source_urls': ['https://cpan.metacpan.org/authors/id/M/MA/MANWAR'], | ||
| 'checksums': ['2642ecca5b0b038c14812bcad3a9611ff7911dc59c9104d220797f837a880c49'], | ||
| }), | ||
| (name, version, { | ||
| 'modulename': 'AGAT::Utilities', | ||
| 'source_urls': ['https://github.com/NBISweden/AGAT/archive/refs/tags'], | ||
| 'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': '%(name)s-%(version)s.tar.gz'}], | ||
| 'checksums': ['998e32a3cb5e941efd324daf9ee4e0a71d605d06999922f083170b7a9f059899'], | ||
| }), | ||
| ] | ||
|
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| modextrapaths = {'PERL5LIB': 'lib/perl5/site_perl/%(perlver)s/'} | ||
|
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| sanity_check_paths = { | ||
| 'files': [], | ||
| 'dirs': ['bin', 'lib/perl5/site_perl/%(perlver)s/%(name)s'], | ||
| } | ||
|
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| sanity_check_commands = ['agat_convert_bed2gff.pl --help'] | ||
| moduleclass = 'bio' |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,29 @@ | ||
| easyblock = 'Tarball' | ||
|
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| name = 'AMAPVox' | ||
| version = '1.9.4' | ||
| versionsuffix = '-Java-%(javaver)s' | ||
|
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| homepage = 'https://amap-dev.cirad.fr/projects/amapvox' | ||
| description = "LiDAR data voxelisation software" | ||
|
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| toolchain = SYSTEM | ||
|
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| source_urls = ['http://amap-dev.cirad.fr/attachments/download/1916/'] | ||
| sources = [SOURCE_ZIP] | ||
| checksums = ['6d3e65fbd17a8e3a45962f5d1ce60a58ad0bfd899fa704dc172f2819fc309b74'] | ||
|
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| dependencies = [('Java', '11')] | ||
|
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| postinstallcmds = ["chmod a+x %(installdir)s/AMAPVox.sh"] | ||
|
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| sanity_check_paths = { | ||
| 'files': ['AMAPVox.sh', 'AMAPVox-%(version)s.jar'], | ||
| 'dirs': ['lib'], | ||
| } | ||
|
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| sanity_check_commands = ["AMAPVox.sh -h"] | ||
|
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| modextrapaths = {'PATH': ''} | ||
|
|
||
| moduleclass = 'data' |
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46 changes: 46 additions & 0 deletions
46
easybuild/easyconfigs/a/AMS/AMS-2022.102-iimpi-2021b-intelmpi.eb
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,46 @@ | ||
| easyblock = 'Tarball' | ||
|
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| name = 'AMS' | ||
| version = '2022.102' | ||
| versionsuffix = '-intelmpi' | ||
|
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| homepage = 'https://www.scm.com/amsterdam-modeling-suite/' | ||
| description = """ | ||
| The Amsterdam Modeling Suite (AMS) provides a comprehensive set of modules for computational chemistry and materials | ||
| science, from quantum mechanics to fluid thermodynamics. | ||
| """ | ||
|
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| toolchain = {'name': 'iimpi', 'version': '2021b'} | ||
|
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| sources = ['ams%(version)s.pc64_linux.intelmpi.bin.tgz'] | ||
| checksums = ['a1791e0ea17426199a8c82668858a509debd3a6b99adc107e452084095d72344'] | ||
|
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| dependencies = [('libGLU', '9.0.2')] | ||
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| keepsymlinks = True | ||
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| sanity_check_paths = { | ||
| 'files': [], | ||
| 'dirs': ['atomicdata', 'bin', 'examples'], | ||
| } | ||
|
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| # check if license file is installed | ||
| # sanity_check_commands = ['dirac check'] | ||
|
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| modextrapaths = { | ||
| 'AMSHOME': '', | ||
| 'AMSBIN': 'bin', | ||
| 'AMSRESOURCES': 'atomicdata', | ||
| } | ||
|
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| modextravars = { | ||
| # use Intel MPI from EasyBuild | ||
| 'SCM_USE_LOCAL_IMPI': '1', | ||
| } | ||
|
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| modloadmsg = """These environment variables need to be defined before using AMS: | ||
| * $SCMLICENSE: path to AMS license file | ||
| * $SCM_TMPDIR: path to user scratch directory | ||
| """ | ||
|
|
||
| moduleclass = 'chem' |
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