barcodetrackR is an R package developed for the analysis and visualization of clonal tracking data from cellular barcoding experiments.
The R package and functions were created by Diego A. Espinoza, Ryland D. Mortlock, Samson J. Koelle, and others at Cynthia Dunbar's laboratory at the National Heart, Lung, and Blood Institutes of Health.
Three options for installation are available. For the most recent version of the package, install from GitHub using remotes or devtools. For stable versions of the package, see Bioconductor/Zenodo.
remotes::install_github("d93espinoza/barcodetrackR")
barcodetrackR Bioconductor page
BiocManager::install("barcodetrackR")
# v0.99.3 was frozen on Zenodo on 2021-03-16, prior to publication and can be accessed using the above DOI badge.
Examples and documentation are available at: http://dunbarlabNIH.github.io/barcodetrackR/
Our preprint is available on bioRxiv
To run the barcodetrackR app from the web, please visit: https://dunbarlabnih.shinyapps.io/barcode_app/
Issues should be addressed to: https://github.com/dunbarlabNIH/barcodetrackR/issues