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This repository has been archived by the owner on Nov 6, 2020. It is now read-only.

Issues: dnanexus-archive/parliament2

25 Open 28 Closed
25 Open 28 Closed
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Issues list

Adding support for CRAM
#90 opened Oct 7, 2020 by husamia
1
Running Parliament2 on multiple WGS sammples
#89 opened Aug 18, 2020 by nitha26
[E::hts_open_format] Failed to open file input.bam error
#88 opened Jul 13, 2020 by info-97
svviz_output
#87 opened Apr 29, 2020 by gdaviduu
1
How to change bin_size parameter of CNVnator?
#86 opened Apr 26, 2020 by adily777
Access to test dataset
#84 opened Nov 18, 2019 by ManavalanG
Question regarding using large WGS datasets
#82 opened Oct 9, 2019 by oalavijeh
Is it ok to use svtyper on CNVnator?
#81 opened Sep 21, 2019 by gevro
1
CNVnator error log
#80 opened Sep 19, 2019 by lee039
Parliament2 never terminates if running CNVnator with svtyper
#79 opened Sep 18, 2019 by tfenne
Various bug fixes
#78 opened Sep 15, 2019 by gevro
3
Attempt to move input BAM file?
#77 opened Sep 6, 2019 by tfenne
2
Parliament2 v0.1.8 VS v0.1.10 - performances
#74 opened Aug 5, 2019 by MaestSi
4
Can't parse sequence for chromosome
#69 opened Jun 13, 2019 by feihongloveworld
8
Add GRIDSS support
#68 opened Jun 12, 2019 by d-cameron
1
"chr" always added to chromosome names in combined_genotyped.vcf
#67 opened Jun 10, 2019 by vladimirkovacevic
Enable configurable paths for inputs, intermediate files and outputs in Docker image
#60 opened May 14, 2019 by vladimirkovacevic
1
MANTA is often killed after 6 hours before it completes bug Something isn't working
#51 opened Feb 5, 2019 by davidcotter
@slzarate
6
AVGLEN slightly different from END-POS value
#50 opened Feb 3, 2019 by MaestSi
4
Reference index file is not optional for Manta
#48 opened Jan 31, 2019 by davidcotter
1
Breakseq2 for hg38-based bam files enhancement New feature or request
#45 opened Jan 17, 2019 by MaestSi
1
Error: No results were generated. bug Something isn't working
#44 opened Jan 16, 2019 by yueyuanliu
@slzarate
3
svtyper throws exception on cnvnator vcf
#37 opened Nov 26, 2018 by scalavision
@slzarate
1
Annotation of SV over genes enhancement New feature or request
#9 opened Jul 16, 2018 by fritzsedlazeck
4
Missing some chromosomes for some callers
#8 opened Jun 28, 2018 by slzarate
@slzarate
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