Getting Started - accounts & installing conda/bioconda, etc.
Integrate your github username & password
Partitions/queues we have access to
More advanced usage- includes:
- using local temp directory on nodes
- nodes, tasks, and cpus-per-task
Magic commands and informative links
The appropriate help mailing list is farm-hpc@ucdavis.edu - the list admins@cse.ucdavis.edu is for things that you don't want followed up on.
New farm docs: www.hpc.ucdavis.edu/posts/about_farm/
CSE wiki: wiki.cse.ucdavis.edu/support/systems/farm
Whitehead lab wiki: wiki/Using-the-farm-cluster
Convenient SLURM commands (Harvard): https://www.rc.fas.harvard.edu/resources/documentation/convenient-slurm-commands/
Copy files onto farm using port 2022:
scp -P 2022 here_file account@farm.cse.ucdavis.edu:there_file
You can also use GLOBUS - see globus docs
If you have a UC Davis account, you can apply to get a farm account here:
wiki.cse.ucdavis.edu/cgi-bin/index2.pl
Select "Farm/CAES", and "Brown."