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Pinned

  1. GrapHiC GrapHiC Public

    Python module to efficiently construct graph datasets from Hi-C and ChIPseq data

    Jupyter Notebook 5

  2. genotyping_scRNAseq genotyping_scRNAseq Public

    A selection of scripts to assign barcoded single cells to a likely donor given a sorted BAM file and a list of barcodes to consider.

    Shell 1 3

  3. Activity-By-Contact_Enhancer-Promoter_Link_Prediction Activity-By-Contact_Enhancer-Promoter_Link_Prediction Public

    Reimplementation of the ABC model of enhancer-promoter link prediction using ChIPseq and Hi-C

    Python 2

  4. GenTools GenTools Public

    A selection of personal bioinformatics tools I am using to deal with ChIPseq, DNA methylation, Hi-C and single-cell Hi-C datasets

    Jupyter Notebook

  5. Cellular-modelling-with-Chaste Cellular-modelling-with-Chaste Public

    C++