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@IPTC-DataAnalysisCourse
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cwieder/README.md

cwieder

Research in bioinformatics, specifically:

  • Pathway analysis
  • Multi-omics data integration
  • Computational metabolomics

GoogleScholar

Developer of the sspa Python package for (metabolomics) single-sample and conventional pathway analysis methods.

Please get in touch for collaboration!

Pinned

  1. py-ssPA py-ssPA Public

    Single sample pathway analysis tools for omics data

    Jupyter Notebook 10 4

  2. PathIntegrate PathIntegrate Public

    PathIntegrate Python package for pathway-based multi-omics data integration

    Jupyter Notebook 7 1

  3. SymbNET_tutorial SymbNET_tutorial Public

    Pathway analysis tutorial for SymbNET 23

    Jupyter Notebook 2

  4. metabolomics-ORA metabolomics-ORA Public

    Code for simulations in "Pathway analysis in metabolomics: Pitfalls and best practice for the use of Over-representation Analysis" Wieder C, Frainay C, Poupin N, Rodríguez-Mier P, Vinson F, et al. …

    Jupyter Notebook 8 3