Skip to content

pangolin v3.1
Compare
Choose a tag to compare
@aineniamh aineniamh released this 15 Jun 18:55
· 374 commits to master since this release
v3.1
e9b69ba

Release notes

  • FULL ENV UPDATE REQUIRED with this release
  • Curated final lineage call, lineage conflicts between scorpio and pangoLEARN/ UShER are resolved by taking the scorpio call. Any changes to the assignment are listed in the notes column (thanks @rmcolq).
  • More flexible usher dependency until bioconda release for MacOSX
  • UShER handles empty input in snakemake (thanks @AngieHinrichs).

Additional dependencies: pango-designation repository

If you don't wish to do a full env update running:

pip install git+https://github.com/cov-lineages/pango-designation.git

in the pangolin environment will install the additional repo. This provides the alias json file to pangolin directly from pango-designation.

Assets 2