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@ilastik @inferno-pytorch
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  1. computational-cell-analytics/micro-sam computational-cell-analytics/micro-sam Public

    Segment Anything for Microscopy

    Jupyter Notebook 295 35

  2. torch-em torch-em Public

    Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.

    Jupyter Notebook 60 17

  3. elf elf Public

    Utils and convenience functions for large-scale bio-image analysis.

    Python 45 19

  4. z5 z5 Public

    Lightweight C++ and Python interface for datasets in zarr and N5 format

    C++ 101 23

  5. cluster_tools cluster_tools Public

    Distributed segmentation for bio-image-analysis

    Python 33 13

  6. DerThorsten/nifty DerThorsten/nifty Public

    A nifty library for graph based image segmentation.

    C++ 41 21