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combiz/README.md

I am Combiz, a full-stack data scientist from the UK working in bioinformatics and fintech. I analyse multimodal data and build analytical solutions including automated pipelines, machine learning and statistical models, APIs, and visualizations. You can check out my work with Open-Source Software and other projects here on GitHub.

Also, feel free to check out my notes and projects on my website.

Recent Highlights

scFlow, an R package toolkit for the analysis of scRNAseq data with higher levels of abstraction. And a Nextflow pipeline, nf-core-scflow, for automated, cloud scalable, reproducible analyses of full scRNAseq datasets using the scFlow toolkit. See the pre-print here or a lay summary here.

     

 

Standard tools I use:

Pinned

  1. scFlow scFlow Public

    Single-cell/nuclei RNA-seq analysis tools in R for a complete workflow.

    R 50 14

  2. nf-core-scflow nf-core-scflow Public

    Complete analysis workflow for single-cell/nuclei RNA-sequencing data.

    Nextflow 7 12

  3. yamlpack yamlpack Public

    En-masse installation of R-packages

    R 16

  4. scFlow-Workshop scFlow-Workshop Public

    Materials for the scFlow Workshop

    HTML 1 1