Popular repositories

1. phrecon phrecon Public

   Phrecon (PHylo RECONstructor) -- This script reconstructs the base sequence using an SNP loci and substituting its bases in at the given locations in the provided reference base sequence.

   Python 2

2. prephix prephix Public

   Prephix (Pre-Phrecon Input fiXer) -- This is a script that takes in a list of input files and generates one SNP loci output file (containing multiple strains), one reference base file, and a file c…

   Python 2 1

3. CDS_Extractor CDS_Extractor Public

   Script for extracting Coding DNA Sequence (CDS) values from a GB file.

   Perl 1 2

4. twstak twstak Public

   TradeWars 2002 Simple Telnet Auto Keyer (macro app)

   Python 1

5. mlstar mlstar Public

   A script that matches and returns an ST type number for a given base reference sequence, MLST fragment files (all fasta formatted), and ST type table file.

   Perl

6. snp_swapper snp_swapper Public

   This script reconstructs the base sequence using a base reference sequence in FASTA format, and a SNP loci file and indel file produced by prephix. It then does substituting, inserting, or deleting…

   Perl