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trivial changes so we can make new BDY for WED025_JRAbq182 (no inter-…
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…annual variability) simulations (Feb, 2020)
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@chrisb13
chrisb13 committed Feb 13, 2020
1 parent 380f9b5 commit 785f99f
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Showing 3 changed files with 24 additions and 19 deletions.
7 changes: 4 additions & 3 deletions concatenate_yearly_BDY.sh
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Expand Up @@ -8,14 +8,15 @@ BDY_DIR="/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_2/BDY_CAT"
BDY_DIR="/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRA/BDY"
BDY_DIR="/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRA_2/BDY"
BDY_DIR="/nerc/n02/n02/chbull/nemo/bld_configs/input_WED025_3/BDY"
BDY_DIR="/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRAbq182/BDY"

YEARi=1976
YEARf=2005
YEARf=2000

#for BDY in bdyT_tra bdyU_u3d bdyU_u2d bdyV_u3d bdyV_u2d bdyT_ssh
#for BDY in bdyT_ice
#for BDY in bdyT_tra bdyU_u3d bdyU_u2d bdyV_u3d bdyV_u2d bdyT_ice bdyT_ssh
for BDY in bdyT_ice
#for BDY in bdyT_ice
for BDY in bdyT_tra bdyU_u3d bdyU_u2d bdyV_u3d bdyV_u2d bdyT_ice bdyT_ssh
do

for YEAR in $(seq $YEARi $YEARf)
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3 changes: 2 additions & 1 deletion concatenate_yearly_runoff.sh
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Expand Up @@ -5,9 +5,10 @@ RNF_DIR="/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025/RNF_CAT"
RNF_DIR="/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRA/RNF"
RNF_DIR="/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRA_2/RNF"
RNF_DIR="/nerc/n02/n02/chbull/nemo/bld_configs/input_WED025_3/RNF"
RNF_DIR="/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRAbq182/RNF"

YEARi=1976
YEARf=2005
YEARf=2000

#----------------------------------------------------------------------------

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33 changes: 18 additions & 15 deletions namelist_WED025_JRA
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Expand Up @@ -3,14 +3,15 @@
!
! namelist for pre-processing NEMO simulations
!
! CB: updated for WED025_JRA simulations (Nov, 2018)
! CB: updated for WED025_JRA simulations (Nov, 2018)
! and now WED025_JRAbq182 (no inter-annual variability) simulations (Feb, 2020)
!
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!

!-------------------------------------------------------------------------------------------------------------------------------
&general
config = 'WED025' ! config name, e.g. 'WED12', 'AMU12', etc
config_dir = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRA' ! dir where new netcdf files will be stored
config_dir = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRAbq182' ! dir where new netcdf files will be stored
/
!--------------------------------------------------------------------------------------------
&griddata
Expand All @@ -21,11 +22,11 @@ config_dir = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRA' ! dir where
!lat_idx_F 379 379 9 54
!lon_idx_F 822 1141 746 1142

file_in_bathy_extract = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/eORCA025_bathymetry_isf_v2.3.nc' ! Bathy on the grid from which we extract the regional domain (e.g. eORCA12).
file_in_coord_extract = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/ORCA025_coordinates_isf_filled.nc' ! Coordinates of grid from which we extract regional domain (e.g. eORCA12).
file_in_bathy_extract = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/eORCA025_bathymetry_isf_v2.3.nc' ! Bathy on the grid from which we extract the regional domain (e.g. eORCA12).
file_in_coord_extract = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/ORCA025_coordinates_isf_filled.nc' ! Coordinates of grid from which we extract regional domain (e.g. eORCA12).
ln_coarse_bdy = .true. ! true if coarser simulation is applied along
! the boundaries (then fill file_in_bathy_bdy)
file_in_bathy_bdy = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/eORCA025_bathymetry_isf_v2.3.nc' ! Bathy on the grid corresponding to the lateral boundary conditions (e.g. ORCA025).
file_in_bathy_bdy = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/eORCA025_bathymetry_isf_v2.3.nc' ! Bathy on the grid corresponding to the lateral boundary conditions (e.g. ORCA025).
ln_isfcav = .true. ! true if the domain includes ice shelves.
! Choose the domain bounds on eORCA12 grid (WARNING: will be rounded to closest point of the coarse grid if ln_coarse_bdy = true) :
nn_imin_extract = 822
Expand All @@ -40,9 +41,10 @@ rn_lonref = 10.0
&init
nn_init = 2 ! 1 -> initial state is an extraction from the corresponding global/large-scale grid [ if ln_coarse_bdy = false ]
! 2 -> initial state from coarser resolution [ if ln_coarse_bdy = true ]
file_in_mask_extract = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Global/large-scale file, according to nn_init
file_in_T = '/fs2/n02/n02/chbull/RawData/u-bc337/onm.nc.file/nemo_bc337o_1m_19760301-19760401_grid-T.nc' ! Temperature (same grid as file_in_mask_extract)
file_in_S = '/fs2/n02/n02/chbull/RawData/u-bc337/onm.nc.file/nemo_bc337o_1m_19760301-19760401_grid-T.nc' ! Salinity (same grid as file_in_mask_extract)

file_in_mask_extract = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Global/large-scale file, according to nn_init
file_in_T = '/fs2/n02/n02/chbull/RawData/u-bq182/onm.nc.file/nemo_bq182o_1m_19760301-19760401_grid-T.nc' ! Temperature (same grid as file_in_mask_extract)
file_in_S = '/fs2/n02/n02/chbull/RawData/u-bq182/onm.nc.file/nemo_bq182o_1m_19760301-19760401_grid-T.nc' ! Salinity (same grid as file_in_mask_extract)
nn_eosmatch = 0 ! match between model equ. of state and istate equ. of state :
! = 0, regional config in TEOS-10 but file_in_T and file_in_S in EOS-80
! = 1, same equation of state everywhere
Expand Down Expand Up @@ -99,8 +101,8 @@ jj_bdy_south(1) = 0 ! j-index for southern boundary (ocean T-pt, sta
! or: <data_dir>/<data_prefix>YYYY<sep1>MM<sep2>DD<data_suffix>.nc
! or: <data_dir>/<data_prefix>YYYY<sep1>MM<data_suffix>.nc
!
data_dir = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRA/bdy_data'
data_prefix = 'nemo_bc337o_1m_'
data_dir = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRAbq182/bdy_data'
data_prefix = 'nemo_bq182o_1m_'
data_suffix_T = '_grid-T' ! suffix for temperature
data_suffix_S = '_grid-T' ! suffix for salinity
data_suffix_U = '_grid-U' ! suffix for zonal velocity
Expand All @@ -109,11 +111,11 @@ data_suffix_ssh = '_grid-T' ! suffix for SSH
data_suffix_ice = '_interp_icemodrdy' ! suffix for sea ice variables
sep1 = 'yyy'
sep2 = 'xxx'
file_data_mask = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Mask for global/large-scale file
file_data_mask = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Mask for global/large-scale file
! (contains umask, vmask)
file_data_zgr = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Vertical mesh sizes (for btp vel.)
file_data_zgr = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Vertical mesh sizes (for btp vel.)
! (contains e3u_0 or e3u and e3v_0 or e3v)
file_data_hgr = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Horizontal mesh sizes (for btp vel.)
file_data_hgr = '/nerc/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot_eORCA025-GO7/mesh_mask_eORCA025-GO7.nc' ! Horizontal mesh sizes (for btp vel.)
nn_yeari = 1976 ! initial year for BDYs
nn_yearf = 2017 ! final year for BDYs
nn_bdy_eosmatch = 0 ! match between model equ. of state and BDY equ. of state :
Expand Down Expand Up @@ -171,9 +173,10 @@ file_sss_mask = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED12_mathiot
! or: <rrr_dir>/<rrr_prefix>YYYY<rrr_sep1>MM<rrr_suffix>.nc
! or: <rrr_dir>/<rrr_prefix>.nc [ for climatology ]
!
rrr_dir = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRA/bdy_data'

rrr_prefix = 'nemo_bc337o_1m_'
rrr_dir = '/fs2/n02/n02/chbull/nemo/bld_configs/input_WED025_JRAbq182/bdy_data'

rrr_prefix = 'nemo_bq182o_1m_'
rrr_sep1 = 'yyy'
rrr_sep2 = 'xxx'
rrr_suffix = '_grid-T'
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