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36 Open 332 Closed
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Issues list

Create a new GitHub release with the new schema version 5.1 Next minor CELLxGENE schema version after 5.0 dp Data Platform Team work
#911 opened May 15, 2024 by Bento007
Update CellGuide and WMG to use the new schema version 5.1 Next minor CELLxGENE schema version after 5.0 dp Data Platform Team work
#909 opened May 15, 2024 by Bento007
3
Coordinate any downstream changes with Census and Applications 5.1 Next minor CELLxGENE schema version after 5.0 dp Data Platform Team work
#908 opened May 15, 2024 by Bento007
Bulk publish the new datasets 5.1 Next minor CELLxGENE schema version after 5.0 dp Data Platform Team work
#907 opened May 15, 2024 by Bento007
Run the migration in prod, which publishes the new cellxgene-schema package to PyPI. Iteratively address any feedback from Lattice or errors we see. 5.1 Next minor CELLxGENE schema version after 5.0 dp Data Platform Team work
#906 opened May 15, 2024 by Bento007
Run the migration in dev. Iteratively address any feedback from Lattice or errors we see. 5.1 Next minor CELLxGENE schema version after 5.0 dp Data Platform Team work
#905 opened May 15, 2024 by Bento007
Run the migration in rdev 5.1 Next minor CELLxGENE schema version after 5.0 dp Data Platform Team work
#904 opened May 15, 2024 by Bento007
upgrade anndata to latest version dependencies Pull requests that update a dependency file dp Data Platform Team work python Pull requests that update Python code tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#894 opened May 9, 2024 by Bento007
1
Complete Migration Check list 5.1 Next minor CELLxGENE schema version after 5.0 dp Data Platform Team work Epic
#888 opened May 8, 2024 by Bento007
5 of 13 tasks
Update development_stage_ontology_term_id 5.2 Next minor CELLxGENE schema version after 5.1 schema CELLxGENE Discover dataset schema
#884 opened May 6, 2024 by brianraymor
@brianraymor
Update self_reported_ethnicity_term_id 5.2 Next minor CELLxGENE schema version after 5.1 schema CELLxGENE Discover dataset schema
#874 opened May 1, 2024 by brianraymor
Apply consistent style to assay references editorial schema CELLxGENE Discover dataset schema
#870 opened May 1, 2024 by brianraymor
@brianraymor
cellxgene-schema CLI must add validation for modality and update validation for X 5.2 Next minor CELLxGENE schema version after 5.1 curation software dp Data Platform Team work
#869 opened Apr 30, 2024 by brianraymor
Update uns[{column}_colors] to match ordering in implementation 5.1 Next minor CELLxGENE schema version after 5.0 schema CELLxGENE Discover dataset schema
#854 opened Apr 22, 2024 by brian-mott
2
Explore validation for the orientation of visium images curator request discovery schema CELLxGENE Discover dataset schema
#852 opened Apr 19, 2024 by brianraymor
Update suspension_type 5.2 Next minor CELLxGENE schema version after 5.1 schema CELLxGENE Discover dataset schema
#851 opened Apr 17, 2024 by brianraymor
@brianraymor
Mammary gland cell terms from breast atlas Jamboree curation Updates to published datasets
#849 opened Apr 17, 2024 by aleixpuigb
1 of 3 tasks
@jahilton
1
Redesign table in X (Matrix Layers) to incorporate modality 5.2 Next minor CELLxGENE schema version after 5.1 schema CELLxGENE Discover dataset schema
#848 opened Apr 17, 2024 by brianraymor
@brianraymor
5
Add gene type 5.2 Next minor CELLxGENE schema version after 5.1 schema CELLxGENE Discover dataset schema
#831 opened Mar 27, 2024 by brianraymor
ontology updates w/ 5.1.0 5.1 Next minor CELLxGENE schema version after 5.0 curation Updates to published datasets
#825 opened Mar 23, 2024 by jahilton
@jahilton
1
Improve validation for cases where there is only one donor_id value in obs discovery schema CELLxGENE Discover dataset schema
#820 opened Mar 22, 2024 by brianraymor
@brianraymor
1
Update requirements for feature_length conversation Under active discussion schema CELLxGENE Discover dataset schema
#778 opened Feb 15, 2024 by brianraymor
1
Update the set of Annotators editorial N.N.N Placeholder for 2024 issues - will reassign to minor release schema CELLxGENE Discover dataset schema
#775 opened Feb 14, 2024 by brianraymor
@brianraymor
Update GENCODE and Ontology Bump Curator Report GHAs to no longer require a manual API Key rotation upon Key expiration dp Data Platform Team work P2 tech Tech issues that do not require product prioritization. Tech debt, tooling, ops, etc.
#727 opened Jan 17, 2024 by nayib-jose-gloria
2
Add "observation_expression_id" to obs conversation Under active discussion schema CELLxGENE Discover dataset schema
#703 opened Dec 4, 2023 by pablo-gar
4
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