Skip to content

Issues: chanzuckerberg/cellxgene-census

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

112 Open 456 Closed
112 Open 456 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Incorrect size of result when passing obs_coords discussion python api Related to the API
#1157 opened May 22, 2024 by ivirshup
4
Add dev dependencies to pyproject.toml effort-xxs python api Related to the API tech
#1148 opened May 17, 2024 by ivirshup
5 tasks
Consider adding implementing a data distribution sensitive shuffling algorithm for dataloader libraries enhancement New feature or request python-api pytorch
#1146 opened May 14, 2024 by prathapsridharan
4
vignette links broken bug Something isn't working
#1145 opened May 13, 2024 by jahilton
@ebezzi
Create a step-by-step guide for releasing new embeddings/models documentation Improvements or additions to documentation P1 Priority 1 - Improvement with wide impact, fix within 1 week
#1144 opened May 13, 2024 by pablo-gar
@ebezzi
Update embedding notebooks with new models for LTS documentation Improvements or additions to documentation P0 Priority 0 - Critical, fix ASAP!
#1143 opened May 13, 2024 by pablo-gar
2 tasks
@pablo-gar
Release Geneformer embeddings and model on LTS candidate P0 Priority 0 - Critical, fix ASAP!
#1142 opened May 13, 2024 by pablo-gar
5 tasks
@mlin
Train and release scVI on LTS candidate P0 Priority 0 - Critical, fix ASAP!
#1141 opened May 13, 2024 by pablo-gar
5 tasks
@ebezzi
Publish Census LTS release, June 2024 epic P0 Priority 0 - Critical, fix ASAP!
#1139 opened May 13, 2024 by pablo-gar
@pablo-gar
Add tests and error checking to custom encoders PR P1 Priority 1 - Improvement with wide impact, fix within 1 week pytorch
#1133 opened May 8, 2024 by pablo-gar
@ebezzi
Creating a Census object from inhouse h5ad projects (Discussion)
#1132 opened May 8, 2024 by danishzmalik
5
Make prototype of Census builder with support of Spatial data census builder Related to the census builder tool P0 Priority 0 - Critical, fix ASAP!
#1127 opened May 6, 2024 by pablo-gar
@prathapsridharan
3137 illegal hardware instruction (core dumped) python bug Something isn't working
#1121 opened May 2, 2024 by Mnikley
8
Make sparse tensors csr instead of coo when return_sparse_X=True P1 Priority 1 - Improvement with wide impact, fix within 1 week python api Related to the API pytorch user request
#1120 opened Apr 30, 2024 by pablo-gar
@ebezzi
Add documentation to aid the developer on development and operations for census builder and api census builder Related to the census builder tool documentation Improvements or additions to documentation P1 Priority 1 - Improvement with wide impact, fix within 1 week python api Related to the API
#1109 opened Apr 25, 2024 by prathapsridharan
Census cell similarity search: finalize how to deploy TileDB vector indexes P0 Priority 0 - Critical, fix ASAP!
#1116 opened Apr 25, 2024 by mlin
@mlin
Census cell similarity search: experimental Python API for metadata prediction P0 Priority 0 - Critical, fix ASAP!
#1115 opened Apr 25, 2024 by mlin
@mlin
Census cell similarity search: experimental Python API for searching given AnnData P0 Priority 0 - Critical, fix ASAP!
#1114 opened Apr 25, 2024 by mlin
@mlin
1
Census cell similarity search: set TileDB-Vector-Search indexing parameters and characterize accuracy+perf P0 Priority 0 - Critical, fix ASAP!
#1113 opened Apr 25, 2024 by mlin
@mlin
Census cell similarity search: pipeline to build TileDB Vector Indexes of cell embeddings P0 Priority 0 - Critical, fix ASAP!
#1112 opened Apr 25, 2024 by mlin
@mlin
Work with Tiledb to produce a good design proposal for shape/reshape feature for Tiledb-SOMA census builder Related to the census builder tool proposal Proposal to be reviewed
#1107 opened Apr 22, 2024 by prathapsridharan
@prathapsridharan
Get sample ID (not donor ID) user request
#1096 opened Apr 10, 2024 by stemangiola
4
feat(integration): integrate with geneformer
#1123 opened Apr 9, 2024 by Bento007
R long vectors not supported yet: memory.c:3888 bug Something isn't working
#1095 opened Apr 8, 2024 by CianMurphy
1
Refine SOMA proposal for spatial support to enable Census product requirement and schema draft census schema Schema definition or specification P0 Priority 0 - Critical, fix ASAP!
#1093 opened Apr 5, 2024 by pablo-gar
@pablo-gar
ProTip! What’s not been updated in a month: updated:<2024-04-26.