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34 Open 19 Closed
34 Open 19 Closed
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Issues list

PermissionError: [Errno 13] Permission denied: './output/lossValue_20240507-124250.txt'
#56 opened May 8, 2024 by darlingxinli
The practical result differs from the tutorial
#55 opened Apr 20, 2024 by wenhai-cell87
1
Input single cell data type of scFEA analysis
#54 opened Apr 10, 2024 by LiuCanidk
AttributeError: 'DataFrame' object has no attribute 'append'. Did you mean: '_append'?
#53 opened Apr 10, 2024 by ltgmri
2
RuntimeError: value cannot be converted to type uint8_t without overflow: 3416
#52 opened Apr 10, 2024 by pinkrabbit0326
questions about Pandas?
#51 opened Apr 3, 2024 by DingfanGuo
4
How to biologically interpret negative flux values?
#50 opened Mar 13, 2024 by Joyjoyjoyc
1
Balance values interpretation
#48 opened Jan 30, 2024 by iichelhadi
6
res_dir bug and solution
#47 opened Nov 24, 2023 by FCBMSNLOL
Create STOICHIOMETRY_MATRIX
#45 opened Oct 31, 2023 by paolabc
How to get the over-all flux score in a "Supermodule"
#44 opened Oct 24, 2023 by KarryGoCarry
ValueError: operands could not be broadcast together with shapes
#43 opened Oct 19, 2023 by Dannyxu123
2
-
#42 opened Oct 18, 2023 by ghost
1
scFEA output
#40 opened Jul 11, 2023 by niuruize
7
I cannot output a suitable cell_id file from the seurat object
#39 opened Jun 29, 2023 by pennell01
Is it ok to remove mitochondrial genes in scRNA-seq data if I'm going to use scFEA?
#38 opened Jun 14, 2023 by levinhein
Missing of lipid metabolism network file in download page
#37 opened May 9, 2023 by hiiiyilingzhang
1
How to add other more metabolic pathways?
#36 opened Apr 14, 2023 by AlwaysUp-Lin
3
Zero output in Tutorial1 example2
#35 opened Apr 1, 2023 by sukyorsuki
2
How can I use scFEA in other species?
#34 opened Mar 30, 2023 by xiangyupan
spatial transcriptomic data analysis (spatial dependent metabolic and biochemical changes)
#33 opened Jan 26, 2023 by pillar-github
Could you share the script for “perturbation analysis to identify high impact metabolic genes”？
#32 opened Dec 10, 2022 by Joyce-step
scFEA_tutorial2 Report an error
#31 opened Nov 29, 2022 by swmuyu
3
Support for sparse matrices / AnnData?
#30 opened Oct 12, 2022 by maarten-devries
TypeError: can't convert np.ndarray of type numpy.object_. The only supported types are: float64, float32, float16, complex64, complex128, int64, int32, int16, int8, uint8, and bool.
#29 opened Sep 1, 2022 by QianChwnLyn
3
ProTip! What’s not been updated in a month: updated:<2024-04-30.