Releases: chamberm/fibernavigator
Fall 2019
Windows 10 + Linux (Centos, Ubuntu) builds.
For the Linux build, make sure to link to the lib folder by typing:
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/insert path/fnav/lib
*note that these builds do not support 4K screens. Refer to the build wiki to enable this option.
*note that interacting with the tool via virtual machine will drastically decrease performances and rendering.
Fibernavigator with advanced rendering options such as:
-MAGNETIC tractography (Chamberland et al. 2016, Human Brain Mapping)
-Real-time fiber tractography (Chamberland et al. 2014, Frontiers in Neuroinformatics)
-Tractography-driven resting-state fMRI (Chamberland et al. 2015, Frontiers in Neuroscience)
-Orientation-dependent opacity rendering of fibers (Tax et al. 2015, PLoS ONE)
April 2018
Windows 10 + Linux (Centos, Ubuntu) builds.
For the Linux build, make sure to link to the lib folder by typing:
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/insert path/fnav/lib
*note that these builds do not support 4K screens. Refer to the build wiki to enable this option.
*note that interacting with the tool via virtual machine will drastically decrease performances and rendering.
Fibernavigator with advanced rendering options such as:
-MAGNETIC tractography (Chamberland et al. 2016, Human Brain Mapping)
-Real-time fiber tractography (Chamberland et al. 2014, Frontiers in Neuroinformatics)
-Tractography-driven resting-state fMRI (Chamberland et al. 2015, Frontiers in Neuroscience)
-Orientation-dependent opacity rendering of fibers (Tax et al. 2015, PLoS ONE)
Release-June2017
Windows 8 64bits build, enhanced memory handling for Real-time tracking, loading of large anatomical datasets, etc.
Fibernavigator with advanced rendering options such as:
-MAGNETIC tractography (Chamberland et al. 2016, HBM)
-Orientation-dependent opacity rendering of fibers (Tax et al. 2015, PLoS ONE)
-Real-time fiber tractography (Chamberland et al. 2014, Frontiers in Neuroinformatics)
-Real-time resting-state fMRI (Chamberland et al. 2015, ISMRM Toronto)
-Tractography-driven resting-state fMRI (Chamberland et al. 2015, Frontiers in Neuroscience)
Easy step-by-step guide for MAGNET (coming soon):
https://www.youtube.com/watch?v=0m3AoYcl6mA&t=6s
Easy step-by-step guide for real-time fiber tractography:
1)https://www.youtube.com/watch?v=A3KCekqPTok
2) https://www.youtube.com/watch?v=UDFpvyrXNyA
3) http://chamberm.github.io/dMRItutorials.html
Easy step-by-step guide for real-time resting-state fMRI:
http://chamberm.github.io/fMRItutorials.html
Easy step-by-step guide for opacity-rendering:
- Load fa.nii (see exampleData.zip)
- Load subsamp.tck (streamlines dataset)
- Click on top menu "fibers -> use transparent fibers"
- The different menu option (alpha values, local vs global modes, opacity functions, etc) can be found on the properties panel of the streamlines dataset.
Release-Sept2016
Fibernavigator with advanced rendering options such as:
-MAGNETIC tractography (Chamberland et al. 2016, HBM)
-Orientation-dependent opacity rendering of fibers (Tax et al. 2015, PLoS ONE)
-Real-time fiber tractography (Chamberland et al. 2014, Frontiers in Neuroinformatics)
-Real-time resting-state fMRI (Chamberland et al. 2015, ISMRM Toronto)
-Tractography-driven resting-state fMRI (Chamberland et al. 2015, Frontiers in Neuroscience)
Easy step-by-step guide for opacity-rendering:
- Load fa.nii (see exampleData.zip)
- Load subsamp.tck (streamlines dataset)
- Click on top menu "fibers -> use transparent fibers"
- The different menu option (alpha values, local vs global modes, opacity functions, etc) can be found on the properties panel of the streamlines dataset.
Easy step-by-step guide for MAGNET (coming soon):
https://www.youtube.com/watch?v=0m3AoYcl6mA&t=6s
Easy step-by-step guide for real-time fiber tractography:
Easy step-by-step guide for real-time resting-state fMRI:
http://chamberm.github.io/fMRItutorials.html
Early november
Various improvements
*Fixed initialisation error when using RT-HARDI tracking.
Fibernavigator with advanced rendering options such as:
-Orientation-dependent opacity rendering of fibers (Tax et al. 2015, PLoS ONE)
-Real-time fiber tractography (Chamberland et al. 2014, Frontiers in Neuroinformatics)
-Real-time resting-state fMRI (Chamberland et al. 2015, ISMRM Toronto)
-Tractography-driven resting-state fMRI (Chamberland et al. 2015, Frontiers in Neuroscience)
Easy step-by-step guide for opacity-rendering:
- Load fa.nii (see exampleData.zip)
- Load subsamp.tck (streamlines dataset)
- Click on top menu "fibers -> use transparent fibers"
- The different menu option (alpha values, local vs global modes, opacity functions, etc) can be found on the properties panel of the streamlines dataset.
Easy step-by-step guide for real-time fiber tractography:
Easy step-by-step guide for real-time resting-state fMRI:
http://chamberm.github.io/fMRItutorials.html
Early October release
Various improvements
This release now uses GPU memory for the rendering of Real-time tracked streamlines
We strongly encourage you to use a decent powered Graphics card for ultimate performances.
Fibernavigator with advanced rendering options such as:
-Orientation-dependent opacity rendering of fibers (Tax et al. 2015, PLoS ONE)
-Real-time fiber tractography (Chamberland et al. 2014, Frontiers in Neuroinformatics)
-Real-time resting-state fMRI (Chamberland et al. 2015, ISMRM Toronto)
-Tractography-driven resting-state fMRI (Chamberland et al. 2015, Frontiers in Neuroscience)
Easy step-by-step guide for opacity-rendering:
- Load fa.nii (see exampleData.zip)
- Load subsamp.tck (streamlines dataset)
- Click on top menu "fibers -> use transparent fibers"
- The different menu option (alpha values, local vs global modes, opacity functions, etc) can be found on the properties panel of the streamlines dataset.
Easy step-by-step guide for real-time fiber tractography:
Easy step-by-step guide for real-time resting-state fMRI:
http://chamberm.github.io/fMRItutorials.html
September 2015
Various improvements
This release now uses GPU memory for the rendering of Real-time tracked streamlines
We strongly encourage you to use an NVIDIA powered Graphics card for best performances.
Fibernavigator with advanced rendering options such as:
-Orientation-dependent opacity rendering of fibers (Tax et al. 2015, PLoS ONE)
-Real-time fiber tractography (Chamberland et al. 2014, Frontiers in Neuroinformatics)
-Real-time resting-state fMRI (Chamberland et al. 2015, ISMRM Toronto)
-Tractography-driven resting-state fMRI (Chamberland et al. 2015, Frontiers in Neuroscience)
Easy step-by-step guide for opacity-rendering:
- Load fa.nii (see exampleData.zip)
- Load subsamp.tck (streamlines dataset)
- Click on top menu "fibers -> use transparent fibers"
- The different menu option (alpha values, local vs global modes, opacity functions, etc) can be found on the properties panel of the streamlines dataset.
Easy step-by-step guide for real-time fiber tractography:
Coming soon.
Easy step-by-step guide for real-time resting-state fMRI:
http://chamberm.github.io/tutorials.html
August 2015
Fibernavigator with advanced rendering options such as:
-Orientation-dependent opacity rendering of fibers (Tax et al. 2014, ISMRM)
-Real-time fiber tractography (Chamberland et al. 2014, Frontiers in Neuroinformatics)
-Real-time resting-state fMRI (Chamberland et al. 2015, ISMRM Toronto)
-Tractography-driven resting-state fMRI (Chamberland et al. 2015, Frontiers in Neuroscience)
Easy step-by-step guide for opacity-rendering:
- Load fa.nii (see exampleData.zip)
- Load subsamp.tck (streamlines dataset)
- Click on top menu "fibers -> use transparent fibers"
- The different menu option (alpha values, local vs global modes, opacity functions, etc) can be found on the properties panel of the streamlines dataset.
Easy step-by-step guide for real-time fiber tractography:
Coming soon.
Easy step-by-step guide for real-time resting-state fMRI:
Coming soon.
Release July 2015
Fibernavigator with advanced rendering options such as:
-Orientation-dependent opacity rendering of fibers (Tax et al. 2014, ISMRM)
-Real-time fiber tractography (Chamberland et al. 2014, Frontiers in Neuroinformatics)
-Real-time resting-state fMRI (Chamberland et al. 2015, ISMRM Toronto)
-Tractography-driven resting-state fMRI (Chamberland et al. 2015, Frontiers in Neuroscience)
Easy step-by-step guide for opacity-rendering:
- Load fa.nii (see exampleData.zip)
- Load subsamp.tck (streamlines dataset)
- Click on top menu "fibers -> use transparent fibers"
- The different menu option (alpha values, local vs global modes, opacity functions, etc) can be found on the properties panel of the streamlines dataset.
Easy step-by-step guide for real-time fiber tractography:
Coming soon.
Easy step-by-step guide for real-time resting-state fMRI:
Coming soon.