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Add virus configs #149

Merged
merged 13 commits into from
May 28, 2024
Merged

Add virus configs #149

merged 13 commits into from
May 28, 2024

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LaraFuhrmann
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I added config files and references for poliovirus and drosophila c virus.
A short description with accession numbers for samples use is in the top of the config-files.

Let me know if something should be added.

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github-actions bot commented Feb 5, 2024

🦙 MegaLinter status: ❌ ERROR

Descriptor Linter Files Fixed Errors Elapsed time
✅ BASH shellcheck 11 0 0.56s
✅ DOCKERFILE hadolint 1 0 0.32s
✅ JUPYTER jupyfmt 3 0 0 2.45s
❌ MARKDOWN markdownlint 14 2 3 1.32s
✅ PERL perlcritic 1 0 0.91s
✅ PYTHON black 62 1 0 2.0s
✅ SNAKEMAKE snakefmt 25 0 0 8.85s

See detailed report in MegaLinter reports

MegaLinter is graciously provided by OX Security

@LaraFuhrmann
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I added a README to this branch for the global haplotype reconstruction study. This should not cause any problems.

@LaraFuhrmann
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I added clearer links to the tutorials, and made a subsection Tutorials as requested by the reviewer.

@DrYak DrYak merged commit 86136a9 into master May 28, 2024
6 of 16 checks passed
@LaraFuhrmann LaraFuhrmann deleted the add_virus_configs branch May 29, 2024 11:35
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2 participants