Pinned

1. CMU-SAFARI/RawHash CMU-SAFARI/RawHash Public

   RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computati…

   C 39 4

2. CMU-SAFARI/BLEND CMU-SAFARI/BLEND Public

   BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy while reducing the memory space usage of two important appl…

   C 34 3

3. CMU-SAFARI/Apollo CMU-SAFARI/Apollo Public

   Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of any size. Des…

   C++ 27 2

4. CMU-SAFARI/AirLift CMU-SAFARI/AirLift Public

   AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shared between the two reference genomes and enables remapping a…

   C 26 4

5. BilkentCompGen/hercules BilkentCompGen/hercules Public

   Profile HMM-based hybrid error correction algorithm for long reads

   C++ 20 4

6. calkan/reproducibility calkan/reproducibility Public

   sanity check scripts

   Shell