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Popular repositories

  1. hap-ibd hap-ibd Public

    The hap-ibd program detects identity-by-descent segments in phased genotype data.

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  2. flare flare Public

    The flare program performs local ancestry inference

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  3. sprime sprime Public

    The SPrime program identifies variants that are introgressed from archaic populations.

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  4. ukb-phasing ukb-phasing Public

    A pipeline for phasing UK Biobank whole genome sequence data

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  5. ibd-ends ibd-ends Public

    The ibd-ends program performs probabilistic estimation of identity-by-descent segment endpoints.

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  6. ibd-cluster ibd-cluster Public

    The ibd-cluster program uses multi-individual identity by descent to cluster haplotypes

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