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196 Open 377 Closed
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Issues list

Cell type
#665 opened May 27, 2024 by dongjuleem
Error in ScaleData(): ! No layer matching pattern 'data' found. Please run NormalizeData and retry Run rlang::last_trace() to see where the error occurred.
#664 opened May 24, 2024 by Noralii
CNVs in the reference cells
#663 opened May 7, 2024 by NaCo-Pt
Plotting inferCNV heatmap of several samples
#662 opened May 3, 2024 by farhadfaghihi4
How to roll back inferCNV to a previous version
#661 opened May 2, 2024 by Ryeeeeeeeeee
Issues with "infercnv::add_to_seurat" function in infercnv analysis
#660 opened Apr 30, 2024 by MinxiaoYang
Error in validate_infercnv_obj(infercnv_obj): Problem detected w/ infercnv_obj and Error: No feature overlap between existing object and new layer data
#659 opened Apr 23, 2024 by Prakrithi-P
inferCNV development and support on hiatus
#658 opened Apr 22, 2024 by brianjohnhaas
1
Section of inferCNV heatmap blacked out
#657 opened Apr 22, 2024 by julie-jch
Is the output "17_HMM_predHMMi6.leiden.hmm_mode-subclusters.pred_cnv_genes.dat" on the cellular level?
#656 opened Apr 21, 2024 by mahadabihie
Separation epithelial cells in normal and tumour cells
#655 opened Apr 17, 2024 by LeaLe88
Impact of Filtering Out Highly Expressing Cells
#654 opened Apr 17, 2024 by seongguheo
Extracting HMM Features for chromosomal arm level
#653 opened Apr 9, 2024 by seongguheo
Benchmarking against R infercnv
#652 opened Apr 1, 2024 by LucaZanella15
chmNewColorMap: number of values (752) does not equal number of color (723). It should.
#650 opened Mar 29, 2024 by mayan2009
HWW has spent too long time.
#649 opened Mar 28, 2024 by kiritsugu233
Why do the different samples all have the same CNV levels?
#648 opened Mar 27, 2024 by mahadabihie
Adjustment of parameter 'leiden_resolution' will change the result of run.final.infercnv_obj@expr.data ?
#647 opened Mar 13, 2024 by travilucas
Error on Step 15: No feature overlap between existing object and new layer data
#646 opened Mar 8, 2024 by r-osorio
6
infer cnv on 10x genomics data using Smartseq data as normal reference
#645 opened Mar 1, 2024 by yeswzc
1
STEP 19: problem infercnv.NormalProbabilities.PostFiltering.observation_groupings.txt': No such file or directory
#642 opened Feb 25, 2024 by sigalgrabois
remove lines on heatmap
#640 opened Feb 6, 2024 by yintz
Is there any way to extract gene names that have deletions from infercnv analysis?
#639 opened Feb 5, 2024 by mbihie
2
gene position file not working
#638 opened Jan 31, 2024 by mbihie
Collapsed Bayesian Model for snRNA-seq Data
#637 opened Jan 30, 2024 by yc4346
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