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Add curation interface #346

Closed
7 of 13 tasks
adamltyson opened this issue Mar 12, 2021 · 1 comment
Closed
7 of 13 tasks

Add curation interface #346

adamltyson opened this issue Mar 12, 2021 · 1 comment
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cellfinder-napari Issue concerns the napari plugin enhancement New feature or request

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@adamltyson
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adamltyson commented Mar 12, 2021

Requirements

IO

Curation

Analysis

  • Run cellfinder (assignment to brain region) class based on brainreg segmentation Opened [Feature] Create cells transform widget brainglobe-utils#26 to track
  • Extract cubes & create training YAML file
  • Make training YAML portable (relative cell paths - does this work with the training plugin?) Decided not to do this as absolute paths are necessary for combining >1 training dataset

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@adamltyson adamltyson added the enhancement New feature or request label Mar 12, 2021
@adamltyson adamltyson self-assigned this Mar 12, 2021
@adamltyson adamltyson removed their assignment Jan 10, 2023
@willGraham01 willGraham01 added the cellfinder-napari Issue concerns the napari plugin label Jan 3, 2024
@willGraham01 willGraham01 transferred this issue from brainglobe/cellfinder-napari Jan 3, 2024
@adamltyson adamltyson self-assigned this Jan 12, 2024
@adamltyson
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Closing this issue as I've converted each task to a separate issue

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Labels
cellfinder-napari Issue concerns the napari plugin enhancement New feature or request
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