Allow free rotation of the atlas #36
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…n to avoid race conditions
…o avoid long boot times
updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.9 → v0.2.0](astral-sh/ruff-pre-commit@v0.1.9...v0.2.0) - [github.com/psf/black: 23.12.1 → 24.1.1](psf/black@23.12.1...24.1.1) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates: - [github.com/astral-sh/ruff-pre-commit: v0.2.0 → v0.3.5](astral-sh/ruff-pre-commit@v0.2.0...v0.3.5) - [github.com/psf/black: 24.1.1 → 24.3.0](psf/black@24.1.1...24.3.0) - [github.com/pre-commit/mirrors-mypy: v1.8.0 → v1.9.0](pre-commit/mirrors-mypy@v1.8.0...v1.9.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* import header from brainglobe-utils * split package name over two lines * remove brainglobe png from manifest * add brainglobe-utils dependency
* import header from brainglobe-utils * split package name over two lines * remove brainglobe png from manifest * add brainglobe-utils dependency * Switched from bg-atlasapi to brainglobe-atlasapi * Added lxml_html_clean explicitly to requirements * Pinned itk to 5.4rc2 for now as 5.4rc3 cased a seg fault * Undo itk pin --------- Co-authored-by: Kimberly Meechan <24316371+K-Meech@users.noreply.github.com>
…e napari widget class
Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## dev #36 +/- ##
==========================================
- Coverage 82.35% 81.99% -0.36%
==========================================
Files 9 8 -1
Lines 408 511 +103
==========================================
+ Hits 336 419 +83
- Misses 72 92 +20 ☔ View full report in Codecov by Sentry. |
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Description
What is this PR
Why is this PR needed?
Some slices may have been taken at an angle, rotating the atlas allows viewing and registering to non-orthogonal slices of the atlas.
What does this PR do?
Provides a UI to rotate the atlas based on yaw, pitch and roll. This allows the user to find the correct 2D slice to register to, even if it's not aligned with the atlas axes.
Checklist: