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Basic functionality #14

Merged
merged 47 commits into from
Nov 28, 2023
Merged

Basic functionality #14

merged 47 commits into from
Nov 28, 2023

Commits on Oct 10, 2023

  1. Added default parameter sets to be used for transforms (from brainreg… 

    …ister [IBL] or ARA)
    IgorTatarnikov committed Oct 10, 2023
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  2. Basic magicgui that can import an atlas, translate the atlas/sample, … 

    …and perform selected transforms with either elastix defaults or provided ARA defaults
    IgorTatarnikov committed Oct 10, 2023
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  3. Added a button to reset the image back to origin

    IgorTatarnikov committed Oct 10, 2023
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  4. Added the ability to rotate the image and reset back to original state

    IgorTatarnikov committed Oct 10, 2023
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Commits on Oct 12, 2023

  1. Added start alignment button

    IgorTatarnikov committed Oct 12, 2023
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  2. Added start alignment button

    IgorTatarnikov committed Oct 12, 2023
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  3. Merge remote-tracking branch 'origin/basic-functionality' into basic-… 

    …functionality

# Conflicts:
#	src/bg_elastix/_widget.py
    IgorTatarnikov committed Oct 12, 2023
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  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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    pre-commit-ci[bot] committed Oct 12, 2023
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Commits on Oct 13, 2023

  1. Transitioning basic function to qpty directly. Widget in registration… 

    …_widget.py now uses qtpy directly to replicate the majority of _widget.py functionality.
    IgorTatarnikov committed Oct 13, 2023
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  2. Merge remote-tracking branch 'origin/basic-functionality' into basic-… 

    …functionality
    IgorTatarnikov committed Oct 13, 2023
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  3. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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    pre-commit-ci[bot] committed Oct 13, 2023
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Commits on Oct 16, 2023

  1. Napari image layer is now rotated around the center not at origin

    IgorTatarnikov committed Oct 16, 2023
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Commits on Oct 17, 2023

  1. Tests for setup_parameter_object done

    IgorTatarnikov committed Oct 17, 2023
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  2. [pre-commit.ci] auto fixes from pre-commit.com hooks 

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    pre-commit-ci[bot] committed Oct 17, 2023
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Commits on Oct 24, 2023

  1. Wrote basic tests for registration_widget and register

    @IgorTatarnikov
    IgorTatarnikov committed Oct 24, 2023
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  2. Re-factored the core registration_widget.py to split off each individ… 

    …ual UI component into its own file
    @IgorTatarnikov
    IgorTatarnikov committed Oct 24, 2023
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  3. Added a run settings widget to allow selection of transform types and… 

    … default param settings
    @IgorTatarnikov
    IgorTatarnikov committed Oct 24, 2023
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  4. Added tabs on the left side of the main widget, parameter_list_view r… 

    …epresents parameters in a table widget
    @IgorTatarnikov
    IgorTatarnikov committed Oct 24, 2023
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  5. Can dynamically load default values from the 3 provided sources and l… 

    …oad them into the parameter list view
    @IgorTatarnikov
    IgorTatarnikov committed Oct 24, 2023
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Commits on Oct 25, 2023

  1. Param dictionaries are updated when fields are altered in the table t… 

    …ab view
    @IgorTatarnikov
    IgorTatarnikov committed Oct 25, 2023
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  2. Parameter table now expands when new entries are added

    @IgorTatarnikov
    IgorTatarnikov committed Oct 25, 2023
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Commits on Nov 1, 2023

  1. Fixed merge conflicts with renaming main

    @IgorTatarnikov
    IgorTatarnikov committed Nov 1, 2023
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  2. Plugin runs successfully after renaming

    @IgorTatarnikov
    IgorTatarnikov committed Nov 1, 2023
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Commits on Nov 2, 2023

  1. Param dictionaries passed to the backend directly

    @IgorTatarnikov
    IgorTatarnikov committed Nov 2, 2023
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Commits on Nov 3, 2023

  1. First version of transform selection widget allowing arbitrary number… 

    … of transforms with unique defaults
    @IgorTatarnikov
    IgorTatarnikov committed Nov 3, 2023
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  2. Each column now dynamically imports the correct default file based on… 

    … the selection in the second column of the widget
    @IgorTatarnikov
    IgorTatarnikov committed Nov 3, 2023
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Commits on Nov 6, 2023

  1. Parameters are now read as lists from files, arbitrary numbers of par… 

    …ameter maps can be run in one go
    @IgorTatarnikov
    IgorTatarnikov committed Nov 6, 2023
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Commits on Nov 7, 2023

  1. Moving image adjusts immediately after values are entered, removed ad… 

    …just image button
    @IgorTatarnikov
    IgorTatarnikov committed Nov 7, 2023
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Commits on Nov 8, 2023

  1. When reading parameter files anything after a '\' will now be discard… 

    …ed to allow comments in parameter file
    @IgorTatarnikov
    IgorTatarnikov committed Nov 8, 2023
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Commits on Nov 9, 2023

  1. Updated tests for braingblobe_registration/register.py, added tests f… 

    …or brainglobe_registration/widgets/adjust_moving_image.py
    @IgorTatarnikov
    IgorTatarnikov committed Nov 9, 2023
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  2. Added tests for brainglobe_registration/widgets/select_images_view.py

    @IgorTatarnikov
    IgorTatarnikov committed Nov 9, 2023
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  3. Started tests for brainglobe_registration/widgets/parameter_list_view.py

    @IgorTatarnikov
    IgorTatarnikov committed Nov 9, 2023
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Commits on Nov 10, 2023

  1. Finished tests for brainglobe/registration/widgets/parameter_list_vie… 

    …w.py
    @IgorTatarnikov
    IgorTatarnikov committed Nov 10, 2023
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  2. Started tests for transform_select_view.py

    @IgorTatarnikov
    IgorTatarnikov committed Nov 10, 2023
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Commits on Nov 22, 2023

  1. Updating README.md

    @IgorTatarnikov
    IgorTatarnikov committed Nov 22, 2023
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  2. Update README.md

    @IgorTatarnikov
    IgorTatarnikov committed Nov 22, 2023
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Commits on Nov 23, 2023

  1. Updated README.md

    @IgorTatarnikov
    IgorTatarnikov committed Nov 23, 2023
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  2. Added tests, added dynamic fetching for sample selection

    @IgorTatarnikov
    IgorTatarnikov committed Nov 23, 2023
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  3. Update README.md

    @IgorTatarnikov
    IgorTatarnikov committed Nov 23, 2023
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Commits on Nov 24, 2023

  1. Refactored test_registration_widget.py to account for funcitons movin… 

    …g to utils
    @IgorTatarnikov
    IgorTatarnikov committed Nov 24, 2023
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  2. Fixed line lengths

    @IgorTatarnikov
    IgorTatarnikov committed Nov 24, 2023
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  3. WIP transforming annotations after registration

    @IgorTatarnikov
    IgorTatarnikov committed Nov 24, 2023
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  4. WIP transform annotations after registration

    @IgorTatarnikov
    IgorTatarnikov committed Nov 24, 2023
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Commits on Nov 27, 2023

  1. Transformed annotation and boundaries images from atlas to sample space

    @IgorTatarnikov
    IgorTatarnikov committed Nov 27, 2023
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Commits on Nov 28, 2023

  1. Registered boundaries are now added as an image layer, boundaries ove… 

    …rlaid on sample image after run
    @IgorTatarnikov
    IgorTatarnikov committed Nov 28, 2023
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  2. Changed the source link in the widget header 

    Co-authored-by: Adam Tyson <code@adamltyson.com>
    @IgorTatarnikov @adamltyson
    IgorTatarnikov and adamltyson committed Nov 28, 2023
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  3. Removed tutorial section of the header

    @IgorTatarnikov
    IgorTatarnikov committed Nov 28, 2023
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